Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) (Peach leaf curl fungus) (Lalaria deformans)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Taphrinomycetes; Taphrinales; Taphrinaceae; Taphrina; Taphrina deformans

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4659 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4XC33|R4XC33_TAPDE Uncharacterized protein OS=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) OX=1097556 GN=TAPDE_003651 PE=4 SV=1
MM1 pKa = 7.52SNFYY5 pKa = 11.15DD6 pKa = 3.59EE7 pKa = 5.73VEE9 pKa = 4.11IEE11 pKa = 5.23DD12 pKa = 3.58MSFDD16 pKa = 3.79EE17 pKa = 5.59KK18 pKa = 10.88KK19 pKa = 10.33QLYY22 pKa = 9.66HH23 pKa = 6.57FPCPCGDD30 pKa = 3.22RR31 pKa = 11.84FEE33 pKa = 4.21ITIAQLKK40 pKa = 9.84EE41 pKa = 3.8GDD43 pKa = 3.94DD44 pKa = 3.81VARR47 pKa = 11.84CPSCSLIILVIYY59 pKa = 10.25DD60 pKa = 3.26QDD62 pKa = 4.13DD63 pKa = 3.87YY64 pKa = 11.86LSEE67 pKa = 4.16EE68 pKa = 4.21EE69 pKa = 4.4EE70 pKa = 4.4EE71 pKa = 4.28EE72 pKa = 4.37EE73 pKa = 4.49EE74 pKa = 4.38AVPLAAQPSAIAVV87 pKa = 3.58

Molecular weight: 9.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4XLQ6|R4XLQ6_TAPDE Uncharacterized protein OS=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) OX=1097556 GN=TAPDE_004638 PE=3 SV=1
MM1 pKa = 7.23RR2 pKa = 11.84RR3 pKa = 11.84CWNSGTWTRR12 pKa = 11.84TSRR15 pKa = 11.84SRR17 pKa = 11.84RR18 pKa = 11.84CGLSTGTTRR27 pKa = 11.84PASSDD32 pKa = 3.25NSPSARR38 pKa = 11.84TPRR41 pKa = 11.84SSSRR45 pKa = 11.84RR46 pKa = 11.84HH47 pKa = 4.94SCPTRR52 pKa = 11.84TLSRR56 pKa = 11.84TRR58 pKa = 11.84CTRR61 pKa = 11.84RR62 pKa = 11.84PRR64 pKa = 11.84SGTAPTSPNSPSFPPGRR81 pKa = 11.84RR82 pKa = 11.84SGPSPARR89 pKa = 11.84RR90 pKa = 11.84LAPTTRR96 pKa = 11.84TTSSRR101 pKa = 11.84SSSNDD106 pKa = 2.67TFGRR110 pKa = 11.84PRR112 pKa = 11.84PSTTSWSSSRR122 pKa = 11.84RR123 pKa = 11.84TRR125 pKa = 11.84RR126 pKa = 11.84PSRR129 pKa = 11.84SRR131 pKa = 11.84TPGPSGHH138 pKa = 6.92AARR141 pKa = 11.84RR142 pKa = 11.84PFKK145 pKa = 10.46RR146 pKa = 11.84SRR148 pKa = 11.84QCPSPRR154 pKa = 11.84RR155 pKa = 11.84KK156 pKa = 9.95RR157 pKa = 11.84SVTPDD162 pKa = 2.79GSFGRR167 pKa = 11.84TGG169 pKa = 2.9

Molecular weight: 18.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4650

9

4659

2070129

33

4108

444.3

49.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.471 ± 0.032

1.187 ± 0.011

5.936 ± 0.025

6.225 ± 0.035

3.726 ± 0.023

6.196 ± 0.033

2.373 ± 0.017

5.304 ± 0.023

5.351 ± 0.032

9.337 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.186 ± 0.014

3.778 ± 0.018

4.839 ± 0.026

4.231 ± 0.026

5.799 ± 0.026

8.382 ± 0.033

6.269 ± 0.028

6.384 ± 0.026

1.169 ± 0.012

2.858 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski