Amino acid dipepetide frequency for Rhizoctonia solani dsRNA virus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.759AlaAla: 7.759 ± 2.206
0.97AlaCys: 0.97 ± 0.636
3.88AlaAsp: 3.88 ± 2.544
3.88AlaGlu: 3.88 ± 1.085
0.97AlaPhe: 0.97 ± 0.636
2.91AlaGly: 2.91 ± 1.01
0.97AlaHis: 0.97 ± 0.823
3.88AlaIle: 3.88 ± 3.291
0.97AlaLys: 0.97 ± 0.636
6.79AlaLeu: 6.79 ± 1.534
2.91AlaMet: 2.91 ± 0.449
3.88AlaAsn: 3.88 ± 1.832
4.85AlaPro: 4.85 ± 4.114
8.729AlaGln: 8.729 ± 1.57
5.82AlaArg: 5.82 ± 0.898
6.79AlaSer: 6.79 ± 2.842
8.729AlaThr: 8.729 ± 5.946
0.97AlaVal: 0.97 ± 0.636
0.0AlaTrp: 0.0 ± 0.0
1.94AlaTyr: 1.94 ± 0.187
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.97CysCys: 0.97 ± 0.636
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.97CysPhe: 0.97 ± 0.636
1.94CysGly: 1.94 ± 0.187
0.0CysHis: 0.0 ± 0.0
0.97CysIle: 0.97 ± 0.636
1.94CysLys: 1.94 ± 0.187
0.97CysLeu: 0.97 ± 0.823
0.0CysMet: 0.0 ± 0.519
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.82AspAla: 5.82 ± 2.357
0.0AspCys: 0.0 ± 0.0
4.85AspAsp: 4.85 ± 0.262
3.88AspGlu: 3.88 ± 2.544
3.88AspPhe: 3.88 ± 1.085
0.97AspGly: 0.97 ± 0.823
3.88AspHis: 3.88 ± 2.544
3.88AspIle: 3.88 ± 1.085
0.97AspLys: 0.97 ± 0.636
3.88AspLeu: 3.88 ± 2.544
0.0AspMet: 0.0 ± 0.0
1.94AspAsn: 1.94 ± 1.646
4.85AspPro: 4.85 ± 0.262
0.97AspGln: 0.97 ± 0.636
1.94AspArg: 1.94 ± 1.272
3.88AspSer: 3.88 ± 1.085
1.94AspThr: 1.94 ± 1.646
5.82AspVal: 5.82 ± 2.019
1.94AspTrp: 1.94 ± 1.272
0.97AspTyr: 0.97 ± 0.636
0.0AspXaa: 0.0 ± 0.0
Glu
4.85GluAla: 4.85 ± 0.262
0.0GluCys: 0.0 ± 0.0
0.97GluAsp: 0.97 ± 0.823
1.94GluGlu: 1.94 ± 0.187
3.88GluPhe: 3.88 ± 1.085
0.0GluGly: 0.0 ± 0.0
1.94GluHis: 1.94 ± 1.272
0.97GluIle: 0.97 ± 0.823
1.94GluLys: 1.94 ± 0.187
1.94GluLeu: 1.94 ± 0.187
1.94GluMet: 1.94 ± 0.187
1.94GluAsn: 1.94 ± 1.646
1.94GluPro: 1.94 ± 0.187
0.0GluGln: 0.0 ± 0.0
3.88GluArg: 3.88 ± 1.085
0.0GluSer: 0.0 ± 0.0
4.85GluThr: 4.85 ± 1.721
4.85GluVal: 4.85 ± 3.18
0.97GluTrp: 0.97 ± 0.636
0.97GluTyr: 0.97 ± 0.636
0.0GluXaa: 0.0 ± 0.0
Phe
1.94PheAla: 1.94 ± 1.272
0.97PheCys: 0.97 ± 0.823
5.82PheAsp: 5.82 ± 2.357
2.91PheGlu: 2.91 ± 0.449
0.0PhePhe: 0.0 ± 0.0
3.88PheGly: 3.88 ± 0.374
1.94PheHis: 1.94 ± 1.272
1.94PheIle: 1.94 ± 1.272
1.94PheLys: 1.94 ± 1.272
8.729PheLeu: 8.729 ± 0.111
1.94PheMet: 1.94 ± 0.187
2.91PheAsn: 2.91 ± 0.449
2.91PhePro: 2.91 ± 1.01
3.88PheGln: 3.88 ± 1.085
2.91PheArg: 2.91 ± 0.449
6.79PheSer: 6.79 ± 0.076
1.94PheThr: 1.94 ± 1.646
4.85PheVal: 4.85 ± 0.262
0.0PheTrp: 0.0 ± 0.0
3.88PheTyr: 3.88 ± 1.085
0.0PheXaa: 0.0 ± 0.0
Gly
1.94GlyAla: 1.94 ± 0.187
0.0GlyCys: 0.0 ± 0.0
2.91GlyAsp: 2.91 ± 0.449
2.91GlyGlu: 2.91 ± 0.449
1.94GlyPhe: 1.94 ± 1.272
0.97GlyGly: 0.97 ± 0.636
1.94GlyHis: 1.94 ± 0.187
1.94GlyIle: 1.94 ± 0.187
0.0GlyLys: 0.0 ± 0.0
4.85GlyLeu: 4.85 ± 1.196
0.97GlyMet: 0.97 ± 0.636
2.91GlyAsn: 2.91 ± 1.01
2.91GlyPro: 2.91 ± 2.468
0.97GlyGln: 0.97 ± 0.823
0.97GlyArg: 0.97 ± 0.823
4.85GlySer: 4.85 ± 4.114
1.94GlyThr: 1.94 ± 1.646
3.88GlyVal: 3.88 ± 0.374
0.0GlyTrp: 0.0 ± 0.0
4.85GlyTyr: 4.85 ± 3.18
0.0GlyXaa: 0.0 ± 0.0
His
0.97HisAla: 0.97 ± 0.636
0.97HisCys: 0.97 ± 0.823
0.0HisAsp: 0.0 ± 0.0
0.97HisGlu: 0.97 ± 0.636
3.88HisPhe: 3.88 ± 2.544
0.0HisGly: 0.0 ± 0.0
0.97HisHis: 0.97 ± 0.636
1.94HisIle: 1.94 ± 1.272
0.97HisLys: 0.97 ± 0.636
1.94HisLeu: 1.94 ± 1.272
0.97HisMet: 0.97 ± 0.823
0.97HisAsn: 0.97 ± 0.636
2.91HisPro: 2.91 ± 1.908
2.91HisGln: 2.91 ± 1.01
1.94HisArg: 1.94 ± 1.646
0.0HisSer: 0.0 ± 0.0
1.94HisThr: 1.94 ± 1.646
7.759HisVal: 7.759 ± 0.712
0.0HisTrp: 0.0 ± 0.0
0.97HisTyr: 0.97 ± 0.636
0.0HisXaa: 0.0 ± 0.0
Ile
1.94IleAla: 1.94 ± 0.187
0.0IleCys: 0.0 ± 0.0
0.97IleAsp: 0.97 ± 0.823
0.0IleGlu: 0.0 ± 0.0
1.94IlePhe: 1.94 ± 0.187
2.91IleGly: 2.91 ± 0.449
1.94IleHis: 1.94 ± 0.187
3.88IleIle: 3.88 ± 1.085
6.79IleLys: 6.79 ± 2.993
7.759IleLeu: 7.759 ± 0.747
0.97IleMet: 0.97 ± 0.636
3.88IleAsn: 3.88 ± 0.374
9.699IlePro: 9.699 ± 3.442
0.97IleGln: 0.97 ± 0.823
1.94IleArg: 1.94 ± 1.272
3.88IleSer: 3.88 ± 0.374
1.94IleThr: 1.94 ± 0.187
0.97IleVal: 0.97 ± 0.636
0.0IleTrp: 0.0 ± 0.0
2.91IleTyr: 2.91 ± 1.908
0.0IleXaa: 0.0 ± 0.0
Lys
2.91LysAla: 2.91 ± 0.449
0.0LysCys: 0.0 ± 0.0
1.94LysAsp: 1.94 ± 1.272
1.94LysGlu: 1.94 ± 0.187
4.85LysPhe: 4.85 ± 0.262
1.94LysGly: 1.94 ± 0.187
0.0LysHis: 0.0 ± 0.0
2.91LysIle: 2.91 ± 1.908
0.97LysLys: 0.97 ± 0.823
2.91LysLeu: 2.91 ± 1.908
0.97LysMet: 0.97 ± 0.636
1.94LysAsn: 1.94 ± 1.272
1.94LysPro: 1.94 ± 0.187
1.94LysGln: 1.94 ± 0.187
1.94LysArg: 1.94 ± 1.272
1.94LysSer: 1.94 ± 0.187
0.97LysThr: 0.97 ± 0.636
3.88LysVal: 3.88 ± 1.085
0.97LysTrp: 0.97 ± 0.636
0.97LysTyr: 0.97 ± 0.636
0.0LysXaa: 0.0 ± 0.0
Leu
6.79LeuAla: 6.79 ± 1.383
0.0LeuCys: 0.0 ± 0.0
6.79LeuAsp: 6.79 ± 1.383
2.91LeuGlu: 2.91 ± 0.449
6.79LeuPhe: 6.79 ± 2.993
3.88LeuGly: 3.88 ± 0.374
3.88LeuHis: 3.88 ± 2.544
3.88LeuIle: 3.88 ± 1.085
0.97LeuLys: 0.97 ± 0.636
5.82LeuLeu: 5.82 ± 2.357
0.97LeuMet: 0.97 ± 0.823
2.91LeuAsn: 2.91 ± 2.468
5.82LeuPro: 5.82 ± 2.019
1.94LeuGln: 1.94 ± 0.187
8.729LeuArg: 8.729 ± 2.806
5.82LeuSer: 5.82 ± 2.019
4.85LeuThr: 4.85 ± 0.262
4.85LeuVal: 4.85 ± 1.196
3.88LeuTrp: 3.88 ± 2.544
2.91LeuTyr: 2.91 ± 0.449
0.0LeuXaa: 0.0 ± 0.0
Met
3.88MetAla: 3.88 ± 0.374
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
3.88MetPhe: 3.88 ± 1.085
0.0MetGly: 0.0 ± 0.0
1.94MetHis: 1.94 ± 0.187
0.97MetIle: 0.97 ± 0.636
0.97MetLys: 0.97 ± 0.636
0.97MetLeu: 0.97 ± 0.636
0.97MetMet: 0.97 ± 0.636
0.97MetAsn: 0.97 ± 0.823
1.94MetPro: 1.94 ± 1.272
0.97MetGln: 0.97 ± 0.636
0.97MetArg: 0.97 ± 0.823
4.85MetSer: 4.85 ± 1.196
1.94MetThr: 1.94 ± 1.646
0.97MetVal: 0.97 ± 0.636
0.0MetTrp: 0.0 ± 0.0
2.91MetTyr: 2.91 ± 1.908
0.0MetXaa: 0.0 ± 0.0
Asn
1.94AsnAla: 1.94 ± 1.646
0.0AsnCys: 0.0 ± 0.0
0.97AsnAsp: 0.97 ± 0.636
0.97AsnGlu: 0.97 ± 0.823
3.88AsnPhe: 3.88 ± 1.832
3.88AsnGly: 3.88 ± 0.374
0.97AsnHis: 0.97 ± 0.823
1.94AsnIle: 1.94 ± 0.187
0.0AsnLys: 0.0 ± 0.0
7.759AsnLeu: 7.759 ± 0.712
0.0AsnMet: 0.0 ± 0.0
3.88AsnAsn: 3.88 ± 0.374
1.94AsnPro: 1.94 ± 1.272
0.97AsnGln: 0.97 ± 0.823
2.91AsnArg: 2.91 ± 1.01
3.88AsnSer: 3.88 ± 1.832
0.97AsnThr: 0.97 ± 0.823
4.85AsnVal: 4.85 ± 1.721
1.94AsnTrp: 1.94 ± 0.187
2.91AsnTyr: 2.91 ± 1.908
0.0AsnXaa: 0.0 ± 0.0
Pro
6.79ProAla: 6.79 ± 1.383
0.0ProCys: 0.0 ± 0.0
5.82ProAsp: 5.82 ± 0.898
4.85ProGlu: 4.85 ± 1.721
3.88ProPhe: 3.88 ± 0.374
4.85ProGly: 4.85 ± 2.655
0.97ProHis: 0.97 ± 0.636
0.97ProIle: 0.97 ± 0.823
0.97ProLys: 0.97 ± 0.636
3.88ProLeu: 3.88 ± 0.374
0.97ProMet: 0.97 ± 0.636
0.97ProAsn: 0.97 ± 0.636
2.91ProPro: 2.91 ± 1.01
2.91ProGln: 2.91 ± 0.449
4.85ProArg: 4.85 ± 1.196
7.759ProSer: 7.759 ± 3.665
2.91ProThr: 2.91 ± 0.449
6.79ProVal: 6.79 ± 2.842
0.97ProTrp: 0.97 ± 0.823
3.88ProTyr: 3.88 ± 0.374
0.0ProXaa: 0.0 ± 0.0
Gln
5.82GlnAla: 5.82 ± 2.019
0.97GlnCys: 0.97 ± 0.823
0.0GlnAsp: 0.0 ± 0.0
0.0GlnGlu: 0.0 ± 0.0
3.88GlnPhe: 3.88 ± 0.374
2.91GlnGly: 2.91 ± 0.449
0.97GlnHis: 0.97 ± 0.636
4.85GlnIle: 4.85 ± 1.196
1.94GlnLys: 1.94 ± 0.187
2.91GlnLeu: 2.91 ± 0.449
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
0.97GlnPro: 0.97 ± 0.823
2.91GlnGln: 2.91 ± 2.468
4.85GlnArg: 4.85 ± 1.721
1.94GlnSer: 1.94 ± 1.646
0.97GlnThr: 0.97 ± 0.636
0.0GlnVal: 0.0 ± 0.0
0.97GlnTrp: 0.97 ± 0.823
0.97GlnTyr: 0.97 ± 0.636
0.0GlnXaa: 0.0 ± 0.0
Arg
4.85ArgAla: 4.85 ± 1.196
1.94ArgCys: 1.94 ± 1.272
5.82ArgAsp: 5.82 ± 0.898
2.91ArgGlu: 2.91 ± 0.449
0.0ArgPhe: 0.0 ± 0.0
0.97ArgGly: 0.97 ± 0.636
2.91ArgHis: 2.91 ± 0.449
3.88ArgIle: 3.88 ± 1.085
5.82ArgLys: 5.82 ± 0.56
7.759ArgLeu: 7.759 ± 2.206
1.94ArgMet: 1.94 ± 1.272
4.85ArgAsn: 4.85 ± 3.18
2.91ArgPro: 2.91 ± 1.908
0.0ArgGln: 0.0 ± 0.0
0.97ArgArg: 0.97 ± 0.636
3.88ArgSer: 3.88 ± 1.832
6.79ArgThr: 6.79 ± 1.534
0.97ArgVal: 0.97 ± 0.636
0.0ArgTrp: 0.0 ± 0.0
2.91ArgTyr: 2.91 ± 1.01
0.0ArgXaa: 0.0 ± 0.0
Ser
5.82SerAla: 5.82 ± 4.937
0.0SerCys: 0.0 ± 0.0
8.729SerAsp: 8.729 ± 1.348
1.94SerGlu: 1.94 ± 1.646
4.85SerPhe: 4.85 ± 2.655
3.88SerGly: 3.88 ± 1.085
1.94SerHis: 1.94 ± 0.187
4.85SerIle: 4.85 ± 1.721
3.88SerLys: 3.88 ± 1.085
4.85SerLeu: 4.85 ± 0.262
2.91SerMet: 2.91 ± 0.449
1.94SerAsn: 1.94 ± 1.646
3.88SerPro: 3.88 ± 3.291
0.0SerGln: 0.0 ± 0.0
1.94SerArg: 1.94 ± 1.646
4.85SerSer: 4.85 ± 4.114
5.82SerThr: 5.82 ± 2.019
3.88SerVal: 3.88 ± 0.374
1.94SerTrp: 1.94 ± 1.646
2.91SerTyr: 2.91 ± 2.468
0.0SerXaa: 0.0 ± 0.0
Thr
4.85ThrAla: 4.85 ± 4.114
0.0ThrCys: 0.0 ± 0.0
2.91ThrAsp: 2.91 ± 1.908
1.94ThrGlu: 1.94 ± 1.646
0.97ThrPhe: 0.97 ± 0.636
3.88ThrGly: 3.88 ± 3.291
1.94ThrHis: 1.94 ± 1.646
4.85ThrIle: 4.85 ± 1.721
3.88ThrLys: 3.88 ± 2.544
4.85ThrLeu: 4.85 ± 1.196
2.91ThrMet: 2.91 ± 1.01
4.85ThrAsn: 4.85 ± 2.655
2.91ThrPro: 2.91 ± 1.01
1.94ThrGln: 1.94 ± 0.187
1.94ThrArg: 1.94 ± 0.187
1.94ThrSer: 1.94 ± 0.187
4.85ThrThr: 4.85 ± 1.196
5.82ThrVal: 5.82 ± 2.019
0.97ThrTrp: 0.97 ± 0.823
0.97ThrTyr: 0.97 ± 0.636
0.0ThrXaa: 0.0 ± 0.0
Val
5.82ValAla: 5.82 ± 0.56
0.97ValCys: 0.97 ± 0.636
2.91ValAsp: 2.91 ± 1.908
1.94ValGlu: 1.94 ± 1.272
4.85ValPhe: 4.85 ± 1.721
0.97ValGly: 0.97 ± 0.823
2.91ValHis: 2.91 ± 1.01
2.91ValIle: 2.91 ± 0.449
1.94ValLys: 1.94 ± 0.187
3.88ValLeu: 3.88 ± 0.374
4.85ValMet: 4.85 ± 1.721
1.94ValAsn: 1.94 ± 1.272
7.759ValPro: 7.759 ± 5.123
1.94ValGln: 1.94 ± 0.187
5.82ValArg: 5.82 ± 0.898
2.91ValSer: 2.91 ± 1.908
4.85ValThr: 4.85 ± 1.196
2.91ValVal: 2.91 ± 0.449
0.97ValTrp: 0.97 ± 0.636
3.88ValTyr: 3.88 ± 1.832
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.97TrpGlu: 0.97 ± 0.636
1.94TrpPhe: 1.94 ± 1.646
0.97TrpGly: 0.97 ± 0.636
0.97TrpHis: 0.97 ± 0.636
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.97TrpMet: 0.97 ± 0.823
0.97TrpAsn: 0.97 ± 0.636
2.91TrpPro: 2.91 ± 1.908
1.94TrpGln: 1.94 ± 0.187
1.94TrpArg: 1.94 ± 1.272
1.94TrpSer: 1.94 ± 0.187
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.97TrpTyr: 0.97 ± 0.823
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.91TyrAla: 2.91 ± 0.449
0.97TyrCys: 0.97 ± 0.823
0.97TyrAsp: 0.97 ± 0.636
2.91TyrGlu: 2.91 ± 0.449
4.85TyrPhe: 4.85 ± 0.262
1.94TyrGly: 1.94 ± 0.187
0.0TyrHis: 0.0 ± 0.0
3.88TyrIle: 3.88 ± 1.085
0.97TyrLys: 0.97 ± 0.636
1.94TyrLeu: 1.94 ± 0.187
0.97TyrMet: 0.97 ± 0.45
2.91TyrAsn: 2.91 ± 1.908
1.94TyrPro: 1.94 ± 0.187
1.94TyrGln: 1.94 ± 0.187
5.82TyrArg: 5.82 ± 0.898
2.91TyrSer: 2.91 ± 0.449
0.97TyrThr: 0.97 ± 0.636
2.91TyrVal: 2.91 ± 0.449
0.97TyrTrp: 0.97 ± 0.636
2.91TyrTyr: 2.91 ± 0.449
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1032 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski