Amino acid dipepetide frequency for Neofusicoccum luteum fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.479AlaAla: 1.479 ± 1.314
0.493AlaCys: 0.493 ± 0.237
2.959AlaAsp: 2.959 ± 2.628
3.452AlaGlu: 3.452 ± 1.379
2.959AlaPhe: 2.959 ± 1.421
4.931AlaGly: 4.931 ± 0.344
0.986AlaHis: 0.986 ± 0.474
2.959AlaIle: 2.959 ± 1.616
4.438AlaLys: 4.438 ± 4.954
10.355AlaLeu: 10.355 ± 0.925
1.972AlaMet: 1.972 ± 1.213
3.452AlaAsn: 3.452 ± 1.379
1.479AlaPro: 1.479 ± 0.71
0.493AlaGln: 0.493 ± 0.237
4.438AlaArg: 4.438 ± 1.119
4.931AlaSer: 4.931 ± 1.356
6.41AlaThr: 6.41 ± 1.982
3.452AlaVal: 3.452 ± 0.646
1.972AlaTrp: 1.972 ± 0.947
1.479AlaTyr: 1.479 ± 0.302
0.0AlaXaa: 0.0 ± 0.0
Cys
0.986CysAla: 0.986 ± 0.474
0.493CysCys: 0.493 ± 0.237
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.986CysPhe: 0.986 ± 0.474
0.986CysGly: 0.986 ± 0.474
0.493CysHis: 0.493 ± 0.237
0.986CysIle: 0.986 ± 0.474
0.493CysLys: 0.493 ± 0.237
0.986CysLeu: 0.986 ± 0.474
0.0CysMet: 0.0 ± 0.0
0.986CysAsn: 0.986 ± 0.474
0.0CysPro: 0.0 ± 0.0
0.986CysGln: 0.986 ± 0.474
0.0CysArg: 0.0 ± 0.0
0.493CysSer: 0.493 ± 0.237
0.0CysThr: 0.0 ± 0.0
0.493CysVal: 0.493 ± 0.237
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.959AspAla: 2.959 ± 1.616
0.493AspCys: 0.493 ± 0.237
1.972AspAsp: 1.972 ± 1.077
4.438AspGlu: 4.438 ± 1.917
1.972AspPhe: 1.972 ± 0.947
1.972AspGly: 1.972 ± 0.947
0.986AspHis: 0.986 ± 0.474
3.452AspIle: 3.452 ± 0.367
2.465AspLys: 2.465 ± 0.84
7.396AspLeu: 7.396 ± 1.528
0.0AspMet: 0.0 ± 0.0
1.479AspAsn: 1.479 ± 0.71
2.465AspPro: 2.465 ± 1.852
0.986AspGln: 0.986 ± 1.551
2.959AspArg: 2.959 ± 1.421
6.41AspSer: 6.41 ± 1.982
1.479AspThr: 1.479 ± 0.71
5.917AspVal: 5.917 ± 1.83
0.986AspTrp: 0.986 ± 0.474
0.493AspTyr: 0.493 ± 0.775
0.0AspXaa: 0.0 ± 0.0
Glu
3.945GluAla: 3.945 ± 2.154
0.0GluCys: 0.0 ± 0.0
1.972GluAsp: 1.972 ± 1.077
4.931GluGlu: 4.931 ± 4.717
1.972GluPhe: 1.972 ± 0.947
0.493GluGly: 0.493 ± 0.237
0.0GluHis: 0.0 ± 0.0
2.959GluIle: 2.959 ± 3.64
6.41GluLys: 6.41 ± 5.019
4.438GluLeu: 4.438 ± 0.905
0.986GluMet: 0.986 ± 1.551
0.493GluAsn: 0.493 ± 0.237
0.986GluPro: 0.986 ± 0.474
2.465GluGln: 2.465 ± 0.84
1.972GluArg: 1.972 ± 2.089
7.89GluSer: 7.89 ± 0.26
4.438GluThr: 4.438 ± 0.905
5.424GluVal: 5.424 ± 0.431
2.465GluTrp: 2.465 ± 0.172
0.986GluTyr: 0.986 ± 0.474
0.0GluXaa: 0.0 ± 0.0
Phe
2.959PheAla: 2.959 ± 0.603
0.493PheCys: 0.493 ± 0.237
3.945PheAsp: 3.945 ± 1.142
0.986PheGlu: 0.986 ± 0.539
3.452PhePhe: 3.452 ± 0.367
3.945PheGly: 3.945 ± 0.882
0.986PheHis: 0.986 ± 0.474
3.945PheIle: 3.945 ± 1.895
3.452PheLys: 3.452 ± 0.367
4.438PheLeu: 4.438 ± 2.131
1.479PheMet: 1.479 ± 0.71
2.465PheAsn: 2.465 ± 1.184
1.972PhePro: 1.972 ± 0.947
1.972PheGln: 1.972 ± 0.065
3.945PheArg: 3.945 ± 1.895
5.917PheSer: 5.917 ± 0.818
3.452PheThr: 3.452 ± 0.646
3.452PheVal: 3.452 ± 0.646
0.986PheTrp: 0.986 ± 0.474
0.493PheTyr: 0.493 ± 0.237
0.0PheXaa: 0.0 ± 0.0
Gly
3.945GlyAla: 3.945 ± 0.13
0.493GlyCys: 0.493 ± 0.237
1.972GlyAsp: 1.972 ± 0.947
3.452GlyGlu: 3.452 ± 1.658
5.917GlyPhe: 5.917 ± 0.195
1.972GlyGly: 1.972 ± 0.065
1.479GlyHis: 1.479 ± 0.71
3.452GlyIle: 3.452 ± 0.646
2.465GlyLys: 2.465 ± 1.852
5.424GlyLeu: 5.424 ± 2.605
0.493GlyMet: 0.493 ± 0.237
1.479GlyAsn: 1.479 ± 0.71
3.452GlyPro: 3.452 ± 0.646
0.986GlyGln: 0.986 ± 0.539
2.959GlyArg: 2.959 ± 1.421
3.452GlySer: 3.452 ± 1.658
1.479GlyThr: 1.479 ± 0.71
4.438GlyVal: 4.438 ± 2.131
0.493GlyTrp: 0.493 ± 0.237
2.959GlyTyr: 2.959 ± 1.421
0.0GlyXaa: 0.0 ± 0.0
His
1.479HisAla: 1.479 ± 0.302
0.0HisCys: 0.0 ± 0.0
2.465HisAsp: 2.465 ± 0.172
0.0HisGlu: 0.0 ± 0.0
0.986HisPhe: 0.986 ± 0.474
0.493HisGly: 0.493 ± 0.237
0.986HisHis: 0.986 ± 0.474
0.986HisIle: 0.986 ± 0.474
0.493HisLys: 0.493 ± 0.237
2.959HisLeu: 2.959 ± 0.409
0.0HisMet: 0.0 ± 0.0
0.493HisAsn: 0.493 ± 0.237
1.972HisPro: 1.972 ± 0.065
1.479HisGln: 1.479 ± 0.71
0.493HisArg: 0.493 ± 0.237
2.465HisSer: 2.465 ± 0.172
0.493HisThr: 0.493 ± 0.237
1.479HisVal: 1.479 ± 0.71
0.493HisTrp: 0.493 ± 0.237
0.493HisTyr: 0.493 ± 0.237
0.0HisXaa: 0.0 ± 0.0
Ile
3.452IleAla: 3.452 ± 1.379
0.986IleCys: 0.986 ± 0.474
3.945IleAsp: 3.945 ± 0.13
2.959IleGlu: 2.959 ± 0.603
4.438IlePhe: 4.438 ± 1.119
2.959IleGly: 2.959 ± 1.421
0.493IleHis: 0.493 ± 0.237
3.452IleIle: 3.452 ± 0.646
3.452IleLys: 3.452 ± 0.367
3.452IleLeu: 3.452 ± 0.367
2.959IleMet: 2.959 ± 0.409
1.479IleAsn: 1.479 ± 0.71
2.959IlePro: 2.959 ± 0.603
1.972IleGln: 1.972 ± 0.947
3.945IleArg: 3.945 ± 1.142
4.931IleSer: 4.931 ± 0.668
1.972IleThr: 1.972 ± 0.947
3.452IleVal: 3.452 ± 0.646
1.972IleTrp: 1.972 ± 0.947
0.986IleTyr: 0.986 ± 0.474
0.0IleXaa: 0.0 ± 0.0
Lys
4.438LysAla: 4.438 ± 1.917
0.0LysCys: 0.0 ± 0.0
3.452LysAsp: 3.452 ± 0.367
3.452LysGlu: 3.452 ± 2.391
0.986LysPhe: 0.986 ± 0.539
3.945LysGly: 3.945 ± 1.142
1.972LysHis: 1.972 ± 1.077
2.959LysIle: 2.959 ± 0.603
5.917LysLys: 5.917 ± 4.243
4.931LysLeu: 4.931 ± 3.705
1.479LysMet: 1.479 ± 1.708
1.972LysAsn: 1.972 ± 0.065
1.479LysPro: 1.479 ± 0.302
2.959LysGln: 2.959 ± 2.628
4.931LysArg: 4.931 ± 1.68
8.383LysSer: 8.383 ± 3.059
3.452LysThr: 3.452 ± 3.403
1.972LysVal: 1.972 ± 1.077
1.972LysTrp: 1.972 ± 0.065
1.479LysTyr: 1.479 ± 0.71
0.0LysXaa: 0.0 ± 0.0
Leu
9.862LeuAla: 9.862 ± 1.337
0.986LeuCys: 0.986 ± 0.474
6.41LeuAsp: 6.41 ± 1.054
7.396LeuGlu: 7.396 ± 3.533
6.903LeuPhe: 6.903 ± 1.291
3.945LeuGly: 3.945 ± 0.882
1.479LeuHis: 1.479 ± 0.71
5.424LeuIle: 5.424 ± 0.581
5.917LeuLys: 5.917 ± 2.219
9.862LeuLeu: 9.862 ± 1.7
2.465LeuMet: 2.465 ± 0.172
3.452LeuAsn: 3.452 ± 1.658
4.438LeuPro: 4.438 ± 2.131
5.424LeuGln: 5.424 ± 2.456
5.424LeuArg: 5.424 ± 0.581
8.876LeuSer: 8.876 ± 2.238
6.903LeuThr: 6.903 ± 1.291
10.848LeuVal: 10.848 ± 1.161
1.479LeuTrp: 1.479 ± 0.71
0.986LeuTyr: 0.986 ± 0.474
0.0LeuXaa: 0.0 ± 0.0
Met
2.465MetAla: 2.465 ± 1.184
0.0MetCys: 0.0 ± 0.0
0.986MetAsp: 0.986 ± 0.474
0.986MetGlu: 0.986 ± 1.551
0.493MetPhe: 0.493 ± 0.237
0.493MetGly: 0.493 ± 0.237
0.493MetHis: 0.493 ± 0.237
0.986MetIle: 0.986 ± 0.539
1.479MetLys: 1.479 ± 0.302
1.972MetLeu: 1.972 ± 0.065
0.0MetMet: 0.0 ± 0.0
1.972MetAsn: 1.972 ± 0.065
0.493MetPro: 0.493 ± 0.237
0.0MetGln: 0.0 ± 0.0
2.465MetArg: 2.465 ± 1.184
0.986MetSer: 0.986 ± 0.539
0.986MetThr: 0.986 ± 0.539
2.959MetVal: 2.959 ± 0.603
0.986MetTrp: 0.986 ± 0.474
0.986MetTyr: 0.986 ± 0.474
0.0MetXaa: 0.0 ± 0.0
Asn
0.986AsnAla: 0.986 ± 0.539
0.986AsnCys: 0.986 ± 0.474
2.959AsnAsp: 2.959 ± 0.603
2.465AsnGlu: 2.465 ± 1.184
2.959AsnPhe: 2.959 ± 1.421
2.465AsnGly: 2.465 ± 1.184
1.972AsnHis: 1.972 ± 0.947
3.452AsnIle: 3.452 ± 0.646
2.959AsnLys: 2.959 ± 1.616
5.917AsnLeu: 5.917 ± 0.818
0.0AsnMet: 0.0 ± 0.0
2.465AsnAsn: 2.465 ± 1.184
0.493AsnPro: 0.493 ± 0.237
0.493AsnGln: 0.493 ± 0.775
0.0AsnArg: 0.0 ± 0.0
2.959AsnSer: 2.959 ± 0.409
0.493AsnThr: 0.493 ± 0.237
1.972AsnVal: 1.972 ± 0.947
0.493AsnTrp: 0.493 ± 0.237
2.465AsnTyr: 2.465 ± 0.172
0.0AsnXaa: 0.0 ± 0.0
Pro
0.986ProAla: 0.986 ± 0.474
0.493ProCys: 0.493 ± 0.237
3.452ProAsp: 3.452 ± 1.658
3.945ProGlu: 3.945 ± 2.154
1.479ProPhe: 1.479 ± 0.71
0.493ProGly: 0.493 ± 0.237
0.493ProHis: 0.493 ± 0.237
3.945ProIle: 3.945 ± 0.882
1.972ProLys: 1.972 ± 0.947
3.452ProLeu: 3.452 ± 0.646
0.986ProMet: 0.986 ± 0.539
2.465ProAsn: 2.465 ± 0.172
5.424ProPro: 5.424 ± 1.444
1.972ProGln: 1.972 ± 0.947
1.479ProArg: 1.479 ± 1.314
4.931ProSer: 4.931 ± 0.344
3.452ProThr: 3.452 ± 0.646
3.945ProVal: 3.945 ± 0.882
0.493ProTrp: 0.493 ± 0.237
0.493ProTyr: 0.493 ± 0.237
0.0ProXaa: 0.0 ± 0.0
Gln
0.986GlnAla: 0.986 ± 0.474
0.493GlnCys: 0.493 ± 0.237
0.986GlnAsp: 0.986 ± 0.539
0.986GlnGlu: 0.986 ± 0.539
1.479GlnPhe: 1.479 ± 0.71
2.465GlnGly: 2.465 ± 0.172
1.479GlnHis: 1.479 ± 0.302
0.493GlnIle: 0.493 ± 0.237
2.959GlnLys: 2.959 ± 3.64
5.917GlnLeu: 5.917 ± 4.243
1.479GlnMet: 1.479 ± 0.71
0.986GlnAsn: 0.986 ± 0.539
0.493GlnPro: 0.493 ± 0.237
0.986GlnGln: 0.986 ± 0.539
2.465GlnArg: 2.465 ± 0.84
0.986GlnSer: 0.986 ± 0.539
0.986GlnThr: 0.986 ± 0.474
2.959GlnVal: 2.959 ± 0.603
0.493GlnTrp: 0.493 ± 0.775
1.479GlnTyr: 1.479 ± 0.71
0.0GlnXaa: 0.0 ± 0.0
Arg
3.452ArgAla: 3.452 ± 0.646
0.493ArgCys: 0.493 ± 0.237
2.465ArgAsp: 2.465 ± 0.172
2.465ArgGlu: 2.465 ± 0.84
3.452ArgPhe: 3.452 ± 1.658
2.465ArgGly: 2.465 ± 0.172
1.479ArgHis: 1.479 ± 0.71
1.972ArgIle: 1.972 ± 0.947
5.424ArgLys: 5.424 ± 3.468
5.917ArgLeu: 5.917 ± 2.842
1.972ArgMet: 1.972 ± 0.947
3.452ArgAsn: 3.452 ± 1.379
2.959ArgPro: 2.959 ± 0.603
2.465ArgGln: 2.465 ± 0.84
2.959ArgArg: 2.959 ± 0.603
3.945ArgSer: 3.945 ± 0.13
4.931ArgThr: 4.931 ± 1.356
2.959ArgVal: 2.959 ± 0.603
0.493ArgTrp: 0.493 ± 0.237
0.493ArgTyr: 0.493 ± 0.237
0.0ArgXaa: 0.0 ± 0.0
Ser
5.424SerAla: 5.424 ± 1.593
0.986SerCys: 0.986 ± 0.474
3.452SerAsp: 3.452 ± 0.367
4.931SerGlu: 4.931 ± 2.693
3.452SerPhe: 3.452 ± 0.367
5.917SerGly: 5.917 ± 1.83
1.479SerHis: 1.479 ± 0.71
6.903SerIle: 6.903 ± 0.279
3.945SerLys: 3.945 ± 1.142
10.355SerLeu: 10.355 ± 1.937
1.479SerMet: 1.479 ± 0.71
2.465SerAsn: 2.465 ± 0.172
4.438SerPro: 4.438 ± 1.119
0.986SerGln: 0.986 ± 1.551
5.917SerArg: 5.917 ± 0.818
9.862SerSer: 9.862 ± 1.337
7.396SerThr: 7.396 ± 0.496
6.903SerVal: 6.903 ± 0.279
0.493SerTrp: 0.493 ± 0.775
4.931SerTyr: 4.931 ± 2.693
0.0SerXaa: 0.0 ± 0.0
Thr
3.452ThrAla: 3.452 ± 0.367
1.479ThrCys: 1.479 ± 0.71
1.972ThrAsp: 1.972 ± 0.065
3.452ThrGlu: 3.452 ± 1.379
3.452ThrPhe: 3.452 ± 0.646
5.424ThrGly: 5.424 ± 2.605
0.493ThrHis: 0.493 ± 0.237
2.465ThrIle: 2.465 ± 0.172
1.972ThrLys: 1.972 ± 1.077
7.89ThrLeu: 7.89 ± 2.284
0.986ThrMet: 0.986 ± 0.474
2.465ThrAsn: 2.465 ± 1.184
5.424ThrPro: 5.424 ± 1.593
1.479ThrGln: 1.479 ± 0.302
0.493ThrArg: 0.493 ± 0.775
4.438ThrSer: 4.438 ± 0.107
3.945ThrThr: 3.945 ± 1.895
4.931ThrVal: 4.931 ± 1.68
0.986ThrTrp: 0.986 ± 0.474
0.0ThrTyr: 0.0 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
6.41ValAla: 6.41 ± 2.994
0.0ValCys: 0.0 ± 0.0
3.945ValAsp: 3.945 ± 0.13
2.465ValGlu: 2.465 ± 0.172
3.945ValPhe: 3.945 ± 1.142
3.452ValGly: 3.452 ± 1.658
1.479ValHis: 1.479 ± 0.302
3.945ValIle: 3.945 ± 1.895
2.959ValLys: 2.959 ± 0.409
5.917ValLeu: 5.917 ± 2.842
1.479ValMet: 1.479 ± 0.71
3.945ValAsn: 3.945 ± 0.882
4.931ValPro: 4.931 ± 0.344
2.465ValGln: 2.465 ± 0.172
4.438ValArg: 4.438 ± 1.119
7.396ValSer: 7.396 ± 1.509
3.945ValThr: 3.945 ± 0.13
3.452ValVal: 3.452 ± 1.658
3.452ValTrp: 3.452 ± 1.658
2.465ValTyr: 2.465 ± 0.84
0.0ValXaa: 0.0 ± 0.0
Trp
2.959TrpAla: 2.959 ± 1.421
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.986TrpGlu: 0.986 ± 0.474
1.972TrpPhe: 1.972 ± 0.065
1.479TrpGly: 1.479 ± 0.71
0.493TrpHis: 0.493 ± 0.237
0.493TrpIle: 0.493 ± 0.237
0.986TrpLys: 0.986 ± 0.474
4.931TrpLeu: 4.931 ± 0.344
0.493TrpMet: 0.493 ± 0.237
0.493TrpAsn: 0.493 ± 0.237
0.493TrpPro: 0.493 ± 0.237
0.493TrpGln: 0.493 ± 0.237
0.986TrpArg: 0.986 ± 0.474
1.479TrpSer: 1.479 ± 0.71
0.986TrpThr: 0.986 ± 0.474
0.493TrpVal: 0.493 ± 0.775
0.0TrpTrp: 0.0 ± 0.0
0.986TrpTyr: 0.986 ± 0.474
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.465TyrAla: 2.465 ± 0.172
0.0TyrCys: 0.0 ± 0.0
1.972TyrAsp: 1.972 ± 0.947
1.479TyrGlu: 1.479 ± 0.302
1.479TyrPhe: 1.479 ± 0.71
2.465TyrGly: 2.465 ± 0.172
0.986TyrHis: 0.986 ± 0.539
0.986TyrIle: 0.986 ± 0.474
2.465TyrLys: 2.465 ± 0.84
1.972TyrLeu: 1.972 ± 0.065
0.986TyrMet: 0.986 ± 0.474
0.493TyrAsn: 0.493 ± 0.237
0.0TyrPro: 0.0 ± 0.0
0.493TyrGln: 0.493 ± 0.775
3.945TyrArg: 3.945 ± 0.13
0.986TyrSer: 0.986 ± 0.474
0.0TyrThr: 0.0 ± 0.0
0.986TyrVal: 0.986 ± 0.474
0.493TyrTrp: 0.493 ± 0.237
1.479TyrTyr: 1.479 ± 1.314
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2029 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski