Cordyceps javanica

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales;

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11436 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A545UUR3|A0A545UUR3_9HYPO Cytochrome P450 OS=Cordyceps javanica OX=43265 GN=IF1G_07785 PE=3 SV=1
MM1 pKa = 7.48LVNLSTIAALGAVASAYY18 pKa = 10.03DD19 pKa = 3.78LPDD22 pKa = 3.5NLRR25 pKa = 11.84SLYY28 pKa = 9.48QAHH31 pKa = 7.34LSGEE35 pKa = 4.36CGNALSGPFSTGAVYY50 pKa = 10.78CGDD53 pKa = 3.41IPNAIFLKK61 pKa = 10.82GPDD64 pKa = 3.74GEE66 pKa = 4.42YY67 pKa = 11.07DD68 pKa = 4.74NMDD71 pKa = 3.85IDD73 pKa = 5.68CDD75 pKa = 3.92GANNAAGDD83 pKa = 4.18CANDD87 pKa = 3.92PSGQGQTAFVDD98 pKa = 4.13TVSTYY103 pKa = 11.07GIRR106 pKa = 11.84DD107 pKa = 3.32LDD109 pKa = 4.51ANLHH113 pKa = 5.92SYY115 pKa = 10.12VVFGNEE121 pKa = 3.57GGSPSFSPRR130 pKa = 11.84DD131 pKa = 3.41HH132 pKa = 6.52GVRR135 pKa = 11.84PLSVMAVVCNNQFYY149 pKa = 10.56GVWGDD154 pKa = 3.78TNGFTSTGEE163 pKa = 3.81ASLALAKK170 pKa = 10.61LCFPNDD176 pKa = 3.86GLNGDD181 pKa = 4.43AGHH184 pKa = 7.3DD185 pKa = 3.88EE186 pKa = 4.36KK187 pKa = 11.46DD188 pKa = 3.49VLYY191 pKa = 10.81LAFTGDD197 pKa = 3.35EE198 pKa = 4.24AVPGRR203 pKa = 11.84DD204 pKa = 3.23GANWAAGSPEE214 pKa = 4.03EE215 pKa = 4.75FEE217 pKa = 5.86DD218 pKa = 3.96SIKK221 pKa = 10.99AIGDD225 pKa = 3.55RR226 pKa = 11.84LVASLPSS233 pKa = 3.31

Molecular weight: 24.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A545UVV7|A0A545UVV7_9HYPO Uncharacterized protein OS=Cordyceps javanica OX=43265 GN=IF1G_07329 PE=4 SV=1
MM1 pKa = 7.57IGSTYY6 pKa = 11.11GNACLVRR13 pKa = 11.84FASALSEE20 pKa = 3.87RR21 pKa = 11.84KK22 pKa = 9.14RR23 pKa = 11.84RR24 pKa = 11.84KK25 pKa = 9.99KK26 pKa = 9.94IAQSPAAEE34 pKa = 4.48CGASRR39 pKa = 11.84WEE41 pKa = 4.47RR42 pKa = 11.84ICCLLTDD49 pKa = 4.07RR50 pKa = 11.84TEE52 pKa = 4.45SKK54 pKa = 10.36PPNDD58 pKa = 2.94GRR60 pKa = 11.84FGLRR64 pKa = 11.84ASAQTRR70 pKa = 11.84NSSTCVSGCFLGSRR84 pKa = 11.84NKK86 pKa = 10.2LLHH89 pKa = 6.85SLLQQHH95 pKa = 5.95ARR97 pKa = 11.84YY98 pKa = 9.37RR99 pKa = 3.69

Molecular weight: 11.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11436

0

11436

5262576

35

5499

460.2

50.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.799 ± 0.024

1.321 ± 0.01

5.854 ± 0.019

5.768 ± 0.023

3.604 ± 0.015

7.151 ± 0.022

2.43 ± 0.011

4.513 ± 0.02

4.505 ± 0.021

8.858 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.226 ± 0.009

3.423 ± 0.014

5.936 ± 0.023

4.01 ± 0.017

6.407 ± 0.02

8.012 ± 0.025

5.847 ± 0.016

6.249 ± 0.018

1.449 ± 0.008

2.637 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski