Capybara microvirus Cap3_SP_450

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVT8|A0A4V1FVT8_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_450 OX=2585460 PE=4 SV=1
MM1 pKa = 7.7KK2 pKa = 10.07KK3 pKa = 10.05QKK5 pKa = 10.22LFKK8 pKa = 10.51GKK10 pKa = 9.26EE11 pKa = 3.84IKK13 pKa = 10.34VEE15 pKa = 4.36RR16 pKa = 11.84ISEE19 pKa = 4.03KK20 pKa = 10.23EE21 pKa = 4.13MYY23 pKa = 9.15WGIPYY28 pKa = 10.34GIYY31 pKa = 10.03KK32 pKa = 9.63EE33 pKa = 4.0RR34 pKa = 11.84EE35 pKa = 3.94YY36 pKa = 11.13YY37 pKa = 8.71YY38 pKa = 10.93TDD40 pKa = 4.03LDD42 pKa = 4.24DD43 pKa = 4.37NGRR46 pKa = 11.84EE47 pKa = 4.04IGNMEE52 pKa = 4.03YY53 pKa = 11.05AEE55 pKa = 4.22NDD57 pKa = 3.06EE58 pKa = 4.7EE59 pKa = 5.44GIKK62 pKa = 10.32KK63 pKa = 10.12CIKK66 pKa = 10.31NLEE69 pKa = 4.16CLEE72 pKa = 4.83EE73 pKa = 3.96INKK76 pKa = 10.22YY77 pKa = 10.42YY78 pKa = 10.47EE79 pKa = 3.81

Molecular weight: 9.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W580|A0A4P8W580_9VIRU Nonstructural protein OS=Capybara microvirus Cap3_SP_450 OX=2585460 PE=4 SV=1
MM1 pKa = 7.31NKK3 pKa = 9.92KK4 pKa = 9.94IPWRR8 pKa = 11.84EE9 pKa = 3.94SEE11 pKa = 4.21FKK13 pKa = 10.58NWSTKK18 pKa = 7.65EE19 pKa = 3.77FEE21 pKa = 4.3EE22 pKa = 4.6FFLIKK27 pKa = 10.24KK28 pKa = 8.35RR29 pKa = 11.84TVEE32 pKa = 3.76NYY34 pKa = 9.16RR35 pKa = 11.84YY36 pKa = 10.02RR37 pKa = 11.84GIPEE41 pKa = 4.05EE42 pKa = 4.18KK43 pKa = 10.11YY44 pKa = 10.74KK45 pKa = 10.58ILIYY49 pKa = 10.12ILKK52 pKa = 9.76LKK54 pKa = 11.01NEE56 pKa = 3.95IKK58 pKa = 10.34EE59 pKa = 4.16RR60 pKa = 11.84EE61 pKa = 4.37HH62 pKa = 8.97NDD64 pKa = 2.89MLQSKK69 pKa = 9.45NKK71 pKa = 9.74NRR73 pKa = 11.84II74 pKa = 3.29

Molecular weight: 9.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1541

74

542

220.1

25.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.852 ± 1.93

1.038 ± 0.379

4.478 ± 0.778

8.955 ± 1.984

3.05 ± 0.397

6.684 ± 0.767

1.947 ± 0.413

7.592 ± 0.666

8.436 ± 2.047

6.684 ± 0.397

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.596 ± 0.382

5.97 ± 0.901

3.764 ± 0.791

4.153 ± 0.98

4.348 ± 0.673

5.97 ± 1.014

6.035 ± 0.866

3.18 ± 0.558

1.817 ± 0.234

5.451 ± 0.816
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski