Amino acid dipepetide frequency for Ampivirus A1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.112AlaAla: 8.112 ± 0.0
0.369AlaCys: 0.369 ± 0.0
2.212AlaAsp: 2.212 ± 0.0
3.687AlaGlu: 3.687 ± 0.0
4.794AlaPhe: 4.794 ± 0.0
2.212AlaGly: 2.212 ± 0.0
1.475AlaHis: 1.475 ± 0.0
5.531AlaIle: 5.531 ± 0.0
2.95AlaLys: 2.95 ± 0.0
5.9AlaLeu: 5.9 ± 0.0
1.844AlaMet: 1.844 ± 0.0
1.844AlaAsn: 1.844 ± 0.0
5.531AlaPro: 5.531 ± 0.0
2.95AlaGln: 2.95 ± 0.0
4.425AlaArg: 4.425 ± 0.0
8.112AlaSer: 8.112 ± 0.0
5.162AlaThr: 5.162 ± 0.0
5.9AlaVal: 5.9 ± 0.0
0.737AlaTrp: 0.737 ± 0.0
2.581AlaTyr: 2.581 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.369CysAla: 0.369 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.737CysAsp: 0.737 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.475CysGly: 1.475 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.369CysLys: 0.369 ± 0.0
0.737CysLeu: 0.737 ± 0.0
0.369CysMet: 0.369 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.475CysPro: 1.475 ± 0.0
0.369CysGln: 0.369 ± 0.0
0.737CysArg: 0.737 ± 0.0
1.106CysSer: 1.106 ± 0.0
0.737CysThr: 0.737 ± 0.0
0.369CysVal: 0.369 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.106CysTyr: 1.106 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.581AspAla: 2.581 ± 0.0
1.106AspCys: 1.106 ± 0.0
3.687AspAsp: 3.687 ± 0.0
2.95AspGlu: 2.95 ± 0.0
4.056AspPhe: 4.056 ± 0.0
1.844AspGly: 1.844 ± 0.0
2.581AspHis: 2.581 ± 0.0
2.581AspIle: 2.581 ± 0.0
2.212AspLys: 2.212 ± 0.0
4.056AspLeu: 4.056 ± 0.0
1.475AspMet: 1.475 ± 0.0
1.844AspAsn: 1.844 ± 0.0
5.531AspPro: 5.531 ± 0.0
1.844AspGln: 1.844 ± 0.0
2.95AspArg: 2.95 ± 0.0
2.95AspSer: 2.95 ± 0.0
3.687AspThr: 3.687 ± 0.0
1.844AspVal: 1.844 ± 0.0
1.475AspTrp: 1.475 ± 0.0
2.212AspTyr: 2.212 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
2.95GluAla: 2.95 ± 0.0
0.369GluCys: 0.369 ± 0.0
3.687GluAsp: 3.687 ± 0.0
2.95GluGlu: 2.95 ± 0.0
3.687GluPhe: 3.687 ± 0.0
1.844GluGly: 1.844 ± 0.0
0.0GluHis: 0.0 ± 0.0
5.162GluIle: 5.162 ± 0.0
1.475GluLys: 1.475 ± 0.0
3.319GluLeu: 3.319 ± 0.0
1.106GluMet: 1.106 ± 0.0
2.212GluAsn: 2.212 ± 0.0
1.475GluPro: 1.475 ± 0.0
0.369GluGln: 0.369 ± 0.0
2.212GluArg: 2.212 ± 0.0
4.425GluSer: 4.425 ± 0.0
5.531GluThr: 5.531 ± 0.0
2.95GluVal: 2.95 ± 0.0
0.0GluTrp: 0.0 ± 0.0
1.106GluTyr: 1.106 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
5.531PheAla: 5.531 ± 0.0
0.369PheCys: 0.369 ± 0.0
3.319PheAsp: 3.319 ± 0.0
4.056PheGlu: 4.056 ± 0.0
2.581PhePhe: 2.581 ± 0.0
4.425PheGly: 4.425 ± 0.0
1.106PheHis: 1.106 ± 0.0
2.212PheIle: 2.212 ± 0.0
1.844PheLys: 1.844 ± 0.0
3.687PheLeu: 3.687 ± 0.0
1.475PheMet: 1.475 ± 0.0
3.319PheAsn: 3.319 ± 0.0
3.319PhePro: 3.319 ± 0.0
3.687PheGln: 3.687 ± 0.0
1.844PheArg: 1.844 ± 0.0
4.425PheSer: 4.425 ± 0.0
2.95PheThr: 2.95 ± 0.0
1.475PheVal: 1.475 ± 0.0
0.369PheTrp: 0.369 ± 0.0
1.475PheTyr: 1.475 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
6.268GlyAla: 6.268 ± 0.0
0.369GlyCys: 0.369 ± 0.0
1.475GlyAsp: 1.475 ± 0.0
2.212GlyGlu: 2.212 ± 0.0
1.475GlyPhe: 1.475 ± 0.0
1.475GlyGly: 1.475 ± 0.0
0.369GlyHis: 0.369 ± 0.0
5.162GlyIle: 5.162 ± 0.0
4.794GlyLys: 4.794 ± 0.0
5.531GlyLeu: 5.531 ± 0.0
1.106GlyMet: 1.106 ± 0.0
4.794GlyAsn: 4.794 ± 0.0
1.844GlyPro: 1.844 ± 0.0
1.106GlyGln: 1.106 ± 0.0
2.581GlyArg: 2.581 ± 0.0
5.531GlySer: 5.531 ± 0.0
4.425GlyThr: 4.425 ± 0.0
3.319GlyVal: 3.319 ± 0.0
0.737GlyTrp: 0.737 ± 0.0
2.212GlyTyr: 2.212 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.475HisAla: 1.475 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.369HisAsp: 0.369 ± 0.0
1.106HisGlu: 1.106 ± 0.0
0.369HisPhe: 0.369 ± 0.0
1.106HisGly: 1.106 ± 0.0
0.369HisHis: 0.369 ± 0.0
1.106HisIle: 1.106 ± 0.0
0.737HisLys: 0.737 ± 0.0
1.844HisLeu: 1.844 ± 0.0
0.369HisMet: 0.369 ± 0.0
0.369HisAsn: 0.369 ± 0.0
2.212HisPro: 2.212 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.369HisArg: 0.369 ± 0.0
1.475HisSer: 1.475 ± 0.0
1.475HisThr: 1.475 ± 0.0
1.844HisVal: 1.844 ± 0.0
0.737HisTrp: 0.737 ± 0.0
0.737HisTyr: 0.737 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.056IleAla: 4.056 ± 0.0
0.737IleCys: 0.737 ± 0.0
3.319IleAsp: 3.319 ± 0.0
2.212IleGlu: 2.212 ± 0.0
4.794IlePhe: 4.794 ± 0.0
3.687IleGly: 3.687 ± 0.0
1.844IleHis: 1.844 ± 0.0
2.95IleIle: 2.95 ± 0.0
1.475IleLys: 1.475 ± 0.0
7.743IleLeu: 7.743 ± 0.0
0.737IleMet: 0.737 ± 0.0
4.794IleAsn: 4.794 ± 0.0
4.425IlePro: 4.425 ± 0.0
2.581IleGln: 2.581 ± 0.0
5.162IleArg: 5.162 ± 0.0
3.687IleSer: 3.687 ± 0.0
5.162IleThr: 5.162 ± 0.0
4.056IleVal: 4.056 ± 0.0
1.475IleTrp: 1.475 ± 0.0
1.475IleTyr: 1.475 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.475LysAla: 1.475 ± 0.0
1.106LysCys: 1.106 ± 0.0
4.056LysAsp: 4.056 ± 0.0
0.737LysGlu: 0.737 ± 0.0
2.581LysPhe: 2.581 ± 0.0
1.844LysGly: 1.844 ± 0.0
0.0LysHis: 0.0 ± 0.0
5.162LysIle: 5.162 ± 0.0
1.844LysLys: 1.844 ± 0.0
4.056LysLeu: 4.056 ± 0.0
1.844LysMet: 1.844 ± 0.0
2.581LysAsn: 2.581 ± 0.0
0.737LysPro: 0.737 ± 0.0
0.737LysGln: 0.737 ± 0.0
0.737LysArg: 0.737 ± 0.0
1.475LysSer: 1.475 ± 0.0
2.212LysThr: 2.212 ± 0.0
2.212LysVal: 2.212 ± 0.0
0.737LysTrp: 0.737 ± 0.0
1.106LysTyr: 1.106 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.743LeuAla: 7.743 ± 0.0
1.475LeuCys: 1.475 ± 0.0
5.162LeuAsp: 5.162 ± 0.0
4.425LeuGlu: 4.425 ± 0.0
3.319LeuPhe: 3.319 ± 0.0
4.794LeuGly: 4.794 ± 0.0
1.844LeuHis: 1.844 ± 0.0
4.794LeuIle: 4.794 ± 0.0
4.056LeuLys: 4.056 ± 0.0
7.743LeuLeu: 7.743 ± 0.0
2.95LeuMet: 2.95 ± 0.0
5.162LeuAsn: 5.162 ± 0.0
6.268LeuPro: 6.268 ± 0.0
4.056LeuGln: 4.056 ± 0.0
2.95LeuArg: 2.95 ± 0.0
6.268LeuSer: 6.268 ± 0.0
7.006LeuThr: 7.006 ± 0.0
4.425LeuVal: 4.425 ± 0.0
1.106LeuTrp: 1.106 ± 0.0
2.212LeuTyr: 2.212 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.581MetAla: 2.581 ± 0.0
0.369MetCys: 0.369 ± 0.0
1.475MetAsp: 1.475 ± 0.0
0.737MetGlu: 0.737 ± 0.0
1.844MetPhe: 1.844 ± 0.0
1.475MetGly: 1.475 ± 0.0
1.106MetHis: 1.106 ± 0.0
1.844MetIle: 1.844 ± 0.0
1.475MetLys: 1.475 ± 0.0
1.106MetLeu: 1.106 ± 0.0
0.737MetMet: 0.737 ± 0.0
1.844MetAsn: 1.844 ± 0.0
1.106MetPro: 1.106 ± 0.0
1.475MetGln: 1.475 ± 0.0
1.106MetArg: 1.106 ± 0.0
2.212MetSer: 2.212 ± 0.0
2.581MetThr: 2.581 ± 0.0
1.475MetVal: 1.475 ± 0.0
0.369MetTrp: 0.369 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.581AsnAla: 2.581 ± 0.0
0.0AsnCys: 0.0 ± 0.0
1.106AsnAsp: 1.106 ± 0.0
5.162AsnGlu: 5.162 ± 0.0
3.319AsnPhe: 3.319 ± 0.0
3.687AsnGly: 3.687 ± 0.0
0.737AsnHis: 0.737 ± 0.0
4.425AsnIle: 4.425 ± 0.0
2.581AsnLys: 2.581 ± 0.0
5.9AsnLeu: 5.9 ± 0.0
2.95AsnMet: 2.95 ± 0.0
1.844AsnAsn: 1.844 ± 0.0
3.687AsnPro: 3.687 ± 0.0
2.581AsnGln: 2.581 ± 0.0
2.581AsnArg: 2.581 ± 0.0
3.687AsnSer: 3.687 ± 0.0
2.95AsnThr: 2.95 ± 0.0
3.319AsnVal: 3.319 ± 0.0
1.475AsnTrp: 1.475 ± 0.0
0.737AsnTyr: 0.737 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
4.794ProAla: 4.794 ± 0.0
0.369ProCys: 0.369 ± 0.0
5.162ProAsp: 5.162 ± 0.0
1.844ProGlu: 1.844 ± 0.0
3.319ProPhe: 3.319 ± 0.0
4.425ProGly: 4.425 ± 0.0
2.212ProHis: 2.212 ± 0.0
4.425ProIle: 4.425 ± 0.0
2.581ProLys: 2.581 ± 0.0
7.006ProLeu: 7.006 ± 0.0
1.106ProMet: 1.106 ± 0.0
2.95ProAsn: 2.95 ± 0.0
4.056ProPro: 4.056 ± 0.0
2.212ProGln: 2.212 ± 0.0
4.056ProArg: 4.056 ± 0.0
4.056ProSer: 4.056 ± 0.0
5.531ProThr: 5.531 ± 0.0
2.581ProVal: 2.581 ± 0.0
1.475ProTrp: 1.475 ± 0.0
2.212ProTyr: 2.212 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.95GlnAla: 2.95 ± 0.0
0.737GlnCys: 0.737 ± 0.0
0.737GlnAsp: 0.737 ± 0.0
2.581GlnGlu: 2.581 ± 0.0
2.212GlnPhe: 2.212 ± 0.0
3.319GlnGly: 3.319 ± 0.0
0.0GlnHis: 0.0 ± 0.0
2.581GlnIle: 2.581 ± 0.0
1.106GlnLys: 1.106 ± 0.0
4.056GlnLeu: 4.056 ± 0.0
2.212GlnMet: 2.212 ± 0.0
2.212GlnAsn: 2.212 ± 0.0
2.581GlnPro: 2.581 ± 0.0
0.369GlnGln: 0.369 ± 0.0
0.369GlnArg: 0.369 ± 0.0
2.581GlnSer: 2.581 ± 0.0
4.056GlnThr: 4.056 ± 0.0
2.95GlnVal: 2.95 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
0.737GlnTyr: 0.737 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.844ArgAla: 1.844 ± 0.0
0.0ArgCys: 0.0 ± 0.0
2.581ArgAsp: 2.581 ± 0.0
2.581ArgGlu: 2.581 ± 0.0
1.106ArgPhe: 1.106 ± 0.0
2.212ArgGly: 2.212 ± 0.0
1.106ArgHis: 1.106 ± 0.0
3.687ArgIle: 3.687 ± 0.0
2.95ArgLys: 2.95 ± 0.0
3.687ArgLeu: 3.687 ± 0.0
1.106ArgMet: 1.106 ± 0.0
1.475ArgAsn: 1.475 ± 0.0
3.687ArgPro: 3.687 ± 0.0
2.581ArgGln: 2.581 ± 0.0
1.844ArgArg: 1.844 ± 0.0
4.794ArgSer: 4.794 ± 0.0
4.794ArgThr: 4.794 ± 0.0
4.794ArgVal: 4.794 ± 0.0
0.737ArgTrp: 0.737 ± 0.0
1.475ArgTyr: 1.475 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.531SerAla: 5.531 ± 0.0
0.369SerCys: 0.369 ± 0.0
4.056SerAsp: 4.056 ± 0.0
2.212SerGlu: 2.212 ± 0.0
5.531SerPhe: 5.531 ± 0.0
5.162SerGly: 5.162 ± 0.0
1.475SerHis: 1.475 ± 0.0
5.531SerIle: 5.531 ± 0.0
0.737SerLys: 0.737 ± 0.0
7.006SerLeu: 7.006 ± 0.0
0.737SerMet: 0.737 ± 0.0
4.425SerAsn: 4.425 ± 0.0
6.268SerPro: 6.268 ± 0.0
4.056SerGln: 4.056 ± 0.0
4.425SerArg: 4.425 ± 0.0
8.481SerSer: 8.481 ± 0.0
5.9SerThr: 5.9 ± 0.0
2.95SerVal: 2.95 ± 0.0
1.844SerTrp: 1.844 ± 0.0
0.737SerTyr: 0.737 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
8.481ThrAla: 8.481 ± 0.0
1.106ThrCys: 1.106 ± 0.0
3.687ThrAsp: 3.687 ± 0.0
3.687ThrGlu: 3.687 ± 0.0
3.319ThrPhe: 3.319 ± 0.0
5.162ThrGly: 5.162 ± 0.0
1.475ThrHis: 1.475 ± 0.0
4.056ThrIle: 4.056 ± 0.0
1.106ThrLys: 1.106 ± 0.0
6.268ThrLeu: 6.268 ± 0.0
3.319ThrMet: 3.319 ± 0.0
4.425ThrAsn: 4.425 ± 0.0
3.687ThrPro: 3.687 ± 0.0
4.425ThrGln: 4.425 ± 0.0
4.056ThrArg: 4.056 ± 0.0
6.268ThrSer: 6.268 ± 0.0
4.425ThrThr: 4.425 ± 0.0
5.531ThrVal: 5.531 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
3.319ThrTyr: 3.319 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.794ValAla: 4.794 ± 0.0
0.369ValCys: 0.369 ± 0.0
4.056ValAsp: 4.056 ± 0.0
2.581ValGlu: 2.581 ± 0.0
3.319ValPhe: 3.319 ± 0.0
5.531ValGly: 5.531 ± 0.0
0.0ValHis: 0.0 ± 0.0
2.581ValIle: 2.581 ± 0.0
1.475ValLys: 1.475 ± 0.0
4.425ValLeu: 4.425 ± 0.0
0.737ValMet: 0.737 ± 0.0
5.162ValAsn: 5.162 ± 0.0
5.531ValPro: 5.531 ± 0.0
1.844ValGln: 1.844 ± 0.0
1.475ValArg: 1.475 ± 0.0
4.056ValSer: 4.056 ± 0.0
4.794ValThr: 4.794 ± 0.0
5.162ValVal: 5.162 ± 0.0
0.369ValTrp: 0.369 ± 0.0
0.737ValTyr: 0.737 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.737TrpAla: 0.737 ± 0.0
0.369TrpCys: 0.369 ± 0.0
0.369TrpAsp: 0.369 ± 0.0
1.106TrpGlu: 1.106 ± 0.0
0.369TrpPhe: 0.369 ± 0.0
0.369TrpGly: 0.369 ± 0.0
0.369TrpHis: 0.369 ± 0.0
0.737TrpIle: 0.737 ± 0.0
1.475TrpLys: 1.475 ± 0.0
1.106TrpLeu: 1.106 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.106TrpAsn: 1.106 ± 0.0
0.737TrpPro: 0.737 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.106TrpArg: 1.106 ± 0.0
0.369TrpSer: 0.369 ± 0.0
1.475TrpThr: 1.475 ± 0.0
0.369TrpVal: 0.369 ± 0.0
0.369TrpTrp: 0.369 ± 0.0
1.844TrpTyr: 1.844 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.475TyrAla: 1.475 ± 0.0
0.369TyrCys: 0.369 ± 0.0
2.212TyrAsp: 2.212 ± 0.0
0.0TyrGlu: 0.0 ± 0.0
1.475TyrPhe: 1.475 ± 0.0
0.737TyrGly: 0.737 ± 0.0
0.0TyrHis: 0.0 ± 0.0
1.844TyrIle: 1.844 ± 0.0
0.0TyrLys: 0.0 ± 0.0
2.581TyrLeu: 2.581 ± 0.0
0.369TyrMet: 0.369 ± 0.0
3.319TyrAsn: 3.319 ± 0.0
2.212TyrPro: 2.212 ± 0.0
1.106TyrGln: 1.106 ± 0.0
4.056TyrArg: 4.056 ± 0.0
1.475TyrSer: 1.475 ± 0.0
2.95TyrThr: 2.95 ± 0.0
1.475TyrVal: 1.475 ± 0.0
0.369TyrTrp: 0.369 ± 0.0
1.106TyrTyr: 1.106 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2713 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski