Tea plant line pattern virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus; unclassified Ilarvirus

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A386QVH1|A0A386QVH1_9BROM Coat protein OS=Tea plant line pattern virus OX=2419940 PE=3 SV=1
MM1 pKa = 7.84DD2 pKa = 3.74VKK4 pKa = 10.89SWLSSLSSSSLDD16 pKa = 3.55PLRR19 pKa = 11.84EE20 pKa = 3.98ALLCDD25 pKa = 4.36DD26 pKa = 5.58DD27 pKa = 4.32MPIDD31 pKa = 3.59KK32 pKa = 10.98VEE34 pKa = 4.2EE35 pKa = 3.98NTHH38 pKa = 5.43ISRR41 pKa = 11.84FIGWVILRR49 pKa = 11.84KK50 pKa = 10.07VFFSEE55 pKa = 4.42EE56 pKa = 3.98FASDD60 pKa = 3.21EE61 pKa = 4.51YY62 pKa = 11.73YY63 pKa = 10.57FYY65 pKa = 11.35SDD67 pKa = 3.7CLRR70 pKa = 11.84LRR72 pKa = 11.84FFEE75 pKa = 4.42LFSVPMEE82 pKa = 4.7LYY84 pKa = 10.26DD85 pKa = 4.89ANDD88 pKa = 3.55SGSTNVVFVEE98 pKa = 4.67SDD100 pKa = 2.67ASYY103 pKa = 9.84YY104 pKa = 10.88KK105 pKa = 10.75EE106 pKa = 4.59MEE108 pKa = 4.55DD109 pKa = 4.33LDD111 pKa = 4.36LAFSFPSEE119 pKa = 4.3DD120 pKa = 3.68KK121 pKa = 11.12RR122 pKa = 11.84GDD124 pKa = 3.72VNDD127 pKa = 4.11SSPDD131 pKa = 3.56SVEE134 pKa = 3.88LTEE137 pKa = 4.2VSQVEE142 pKa = 4.19VEE144 pKa = 4.42PYY146 pKa = 10.89LDD148 pKa = 4.66FKK150 pKa = 11.76LEE152 pKa = 4.08VCTLPDD158 pKa = 4.34DD159 pKa = 4.95EE160 pKa = 4.84GLCRR164 pKa = 11.84QLDD167 pKa = 3.99WKK169 pKa = 10.69AQTHH173 pKa = 4.28VVVEE177 pKa = 4.14NVLRR181 pKa = 11.84NSSIEE186 pKa = 4.15IINSMRR192 pKa = 11.84TYY194 pKa = 10.66NANCIQDD201 pKa = 4.76AIDD204 pKa = 3.56EE205 pKa = 4.53VFPHH209 pKa = 6.66HH210 pKa = 6.87FSVDD214 pKa = 2.95DD215 pKa = 4.38RR216 pKa = 11.84YY217 pKa = 10.54FQTFVEE223 pKa = 4.61TSDD226 pKa = 3.79IDD228 pKa = 4.18LEE230 pKa = 4.63LDD232 pKa = 3.35AAHH235 pKa = 7.24IDD237 pKa = 3.43MSKK240 pKa = 10.33FPKK243 pKa = 10.47KK244 pKa = 10.3FDD246 pKa = 3.07IHH248 pKa = 6.96FDD250 pKa = 3.64WEE252 pKa = 4.59PKK254 pKa = 10.48LSTGLTSTRR263 pKa = 11.84YY264 pKa = 9.71NSFRR268 pKa = 11.84EE269 pKa = 3.64AALAIKK275 pKa = 9.8KK276 pKa = 10.33RR277 pKa = 11.84NLNVPDD283 pKa = 4.06LTADD287 pKa = 3.97LDD289 pKa = 3.98VDD291 pKa = 4.1SLVPKK296 pKa = 10.4VMEE299 pKa = 4.54RR300 pKa = 11.84FLKK303 pKa = 10.58ILDD306 pKa = 3.84LGKK309 pKa = 10.88LSGFPDD315 pKa = 4.21DD316 pKa = 4.38SHH318 pKa = 8.75DD319 pKa = 3.84VGCFLLDD326 pKa = 3.39YY327 pKa = 10.56LSRR330 pKa = 11.84KK331 pKa = 8.55GLSYY335 pKa = 11.24DD336 pKa = 3.54VLEE339 pKa = 4.78PGCMVSLNKK348 pKa = 9.26YY349 pKa = 7.76RR350 pKa = 11.84HH351 pKa = 5.72MIKK354 pKa = 10.08SQLKK358 pKa = 8.85PVEE361 pKa = 4.15EE362 pKa = 5.05DD363 pKa = 3.21SLHH366 pKa = 6.21VEE368 pKa = 4.27RR369 pKa = 11.84PLAATITYY377 pKa = 9.36HH378 pKa = 6.34GKK380 pKa = 10.1EE381 pKa = 4.29KK382 pKa = 11.08VSVTTPFFLSLAAKK396 pKa = 8.71LLCVLSDD403 pKa = 3.42KK404 pKa = 11.13VVIPMGKK411 pKa = 8.33EE412 pKa = 3.48HH413 pKa = 6.79QLFDD417 pKa = 3.84INVDD421 pKa = 3.37VFRR424 pKa = 11.84KK425 pKa = 9.19IKK427 pKa = 8.68FWKK430 pKa = 10.02EE431 pKa = 2.77IDD433 pKa = 3.36YY434 pKa = 11.51SKK436 pKa = 10.92FDD438 pKa = 3.38KK439 pKa = 11.22SQGKK443 pKa = 8.33LHH445 pKa = 6.86HH446 pKa = 6.86EE447 pKa = 3.78IQRR450 pKa = 11.84AIFRR454 pKa = 11.84DD455 pKa = 3.91LQCDD459 pKa = 3.44EE460 pKa = 5.22GFLSTWFHH468 pKa = 4.99SHH470 pKa = 5.81EE471 pKa = 4.39FSTIFDD477 pKa = 3.87SEE479 pKa = 4.27AGIGFSTDD487 pKa = 3.49FQRR490 pKa = 11.84RR491 pKa = 11.84TGDD494 pKa = 2.74ACTYY498 pKa = 10.46LGNTLVTLATLSFVYY513 pKa = 10.57DD514 pKa = 4.17LDD516 pKa = 4.55SPDD519 pKa = 3.06VGLIVVSGDD528 pKa = 3.37DD529 pKa = 3.51SLIGTFHH536 pKa = 7.07SEE538 pKa = 3.92LPRR541 pKa = 11.84EE542 pKa = 3.98RR543 pKa = 11.84EE544 pKa = 4.09ILCSTLFNFEE554 pKa = 3.96TKK556 pKa = 10.16FPHH559 pKa = 5.6NQPFICSKK567 pKa = 10.23FLVEE571 pKa = 5.95IEE573 pKa = 4.34TTDD576 pKa = 3.24GRR578 pKa = 11.84GKK580 pKa = 10.33VVAVPSPIKK589 pKa = 10.64LLMKK593 pKa = 10.51LGPKK597 pKa = 10.07SMNKK601 pKa = 9.25QLFPAWVEE609 pKa = 4.25SIKK612 pKa = 10.95DD613 pKa = 3.34YY614 pKa = 11.13AAPFRR619 pKa = 11.84NAFVAEE625 pKa = 4.22QVCNLASYY633 pKa = 10.79RR634 pKa = 11.84FGRR637 pKa = 11.84RR638 pKa = 11.84CFTFLLPAISEE649 pKa = 4.44VLWMLSNPNVKK660 pKa = 10.27LKK662 pKa = 10.92EE663 pKa = 3.94KK664 pKa = 10.82LFLQNSSYY672 pKa = 11.09LSNHH676 pKa = 4.96CHH678 pKa = 7.04DD679 pKa = 3.93RR680 pKa = 11.84RR681 pKa = 11.84EE682 pKa = 4.2KK683 pKa = 9.75EE684 pKa = 4.03KK685 pKa = 10.87KK686 pKa = 9.41RR687 pKa = 11.84NRR689 pKa = 11.84PRR691 pKa = 11.84ARR693 pKa = 11.84SKK695 pKa = 10.78RR696 pKa = 3.69

Molecular weight: 80.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A386QVU9|A0A386QVU9_9BROM Movement protein OS=Tea plant line pattern virus OX=2419940 PE=4 SV=1
MM1 pKa = 7.13STNTQQKK8 pKa = 8.25KK9 pKa = 6.54TRR11 pKa = 11.84QNKK14 pKa = 9.44RR15 pKa = 11.84STQFGQNRR23 pKa = 11.84AKK25 pKa = 10.32QRR27 pKa = 11.84AQSTGEE33 pKa = 3.96SSTVPNFGTLRR44 pKa = 11.84LEE46 pKa = 4.16WVRR49 pKa = 11.84RR50 pKa = 11.84GPGDD54 pKa = 4.42LDD56 pKa = 3.15ILQFPYY62 pKa = 10.43QWVAKK67 pKa = 10.37AEE69 pKa = 4.21SSLKK73 pKa = 9.72ATSNDD78 pKa = 1.88IWYY81 pKa = 9.62IIDD84 pKa = 3.16LHH86 pKa = 6.75EE87 pKa = 4.18YY88 pKa = 8.7VKK90 pKa = 11.41DD91 pKa = 3.39MMEE94 pKa = 4.4FPTSVKK100 pKa = 10.24GFVFLFEE107 pKa = 5.36ANLSGQACLVTKK119 pKa = 9.54KK120 pKa = 9.21TGSFKK125 pKa = 11.05DD126 pKa = 3.44AFSSLNAFKK135 pKa = 10.72FEE137 pKa = 4.55KK138 pKa = 10.27GCHH141 pKa = 4.82TAVQLLAPSILTFATFSAGEE161 pKa = 3.9VALVFKK167 pKa = 11.04FEE169 pKa = 4.18GTLTAGAEE177 pKa = 4.02FMTRR181 pKa = 11.84KK182 pKa = 9.56VWGQSSMLPKK192 pKa = 10.47VEE194 pKa = 3.99INKK197 pKa = 9.53NLLRR201 pKa = 11.84GQQ203 pKa = 3.52

Molecular weight: 22.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

2230

203

1042

557.5

62.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.65 ± 0.533

2.197 ± 0.255

6.413 ± 0.937

6.233 ± 0.419

5.381 ± 0.931

4.529 ± 0.496

2.556 ± 0.418

5.336 ± 0.605

6.637 ± 0.329

9.507 ± 0.506

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.511 ± 0.276

4.619 ± 0.549

3.812 ± 0.219

3.004 ± 0.647

5.291 ± 0.2

9.552 ± 0.437

5.919 ± 0.665

7.489 ± 0.493

0.942 ± 0.231

2.422 ± 0.248
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski