Amino acid dipepetide frequency for Olive latent virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.291AlaAla: 5.291 ± 2.457
0.0AlaCys: 0.0 ± 0.0
0.756AlaAsp: 0.756 ± 0.451
6.803AlaGlu: 6.803 ± 2.775
6.047AlaPhe: 6.047 ± 2.528
3.779AlaGly: 3.779 ± 2.595
0.0AlaHis: 0.0 ± 0.0
5.291AlaIle: 5.291 ± 3.62
4.535AlaLys: 4.535 ± 2.001
6.047AlaLeu: 6.047 ± 1.333
2.268AlaMet: 2.268 ± 1.738
2.268AlaAsn: 2.268 ± 0.972
2.268AlaPro: 2.268 ± 1.738
1.512AlaGln: 1.512 ± 0.902
5.291AlaArg: 5.291 ± 1.994
3.779AlaSer: 3.779 ± 2.515
3.023AlaThr: 3.023 ± 1.661
6.803AlaVal: 6.803 ± 2.705
0.0AlaTrp: 0.0 ± 0.0
1.512AlaTyr: 1.512 ± 0.836
0.0AlaXaa: 0.0 ± 0.0
Cys
1.512CysAla: 1.512 ± 0.795
0.756CysCys: 0.756 ± 1.543
0.756CysAsp: 0.756 ± 1.543
0.756CysGlu: 0.756 ± 0.451
2.268CysPhe: 2.268 ± 0.972
1.512CysGly: 1.512 ± 0.795
1.512CysHis: 1.512 ± 0.836
0.756CysIle: 0.756 ± 0.451
1.512CysLys: 1.512 ± 0.836
1.512CysLeu: 1.512 ± 0.902
0.0CysMet: 0.0 ± 0.0
1.512CysAsn: 1.512 ± 0.836
0.756CysPro: 0.756 ± 0.99
2.268CysGln: 2.268 ± 0.831
1.512CysArg: 1.512 ± 1.452
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.756CysVal: 0.756 ± 0.451
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
0.756AspAla: 0.756 ± 0.451
1.512AspCys: 1.512 ± 0.795
3.023AspAsp: 3.023 ± 1.264
0.0AspGlu: 0.0 ± 0.0
0.0AspPhe: 0.0 ± 0.0
2.268AspGly: 2.268 ± 0.831
0.0AspHis: 0.0 ± 0.0
2.268AspIle: 2.268 ± 0.972
2.268AspLys: 2.268 ± 1.458
5.291AspLeu: 5.291 ± 1.403
0.756AspMet: 0.756 ± 0.451
2.268AspAsn: 2.268 ± 1.715
0.756AspPro: 0.756 ± 0.451
1.512AspGln: 1.512 ± 0.795
0.756AspArg: 0.756 ± 0.99
2.268AspSer: 2.268 ± 0.831
3.779AspThr: 3.779 ± 1.8
3.779AspVal: 3.779 ± 0.738
1.512AspTrp: 1.512 ± 0.836
1.512AspTyr: 1.512 ± 1.47
0.0AspXaa: 0.0 ± 0.0
Glu
6.047GluAla: 6.047 ± 2.528
2.268GluCys: 2.268 ± 0.972
4.535GluAsp: 4.535 ± 3.43
2.268GluGlu: 2.268 ± 1.715
4.535GluPhe: 4.535 ± 1.026
6.803GluGly: 6.803 ± 2.109
4.535GluHis: 4.535 ± 2.031
3.023GluIle: 3.023 ± 1.59
3.023GluLys: 3.023 ± 1.804
2.268GluLeu: 2.268 ± 0.972
0.0GluMet: 0.0 ± 0.0
0.0GluAsn: 0.0 ± 0.0
1.512GluPro: 1.512 ± 0.795
3.023GluGln: 3.023 ± 1.252
3.779GluArg: 3.779 ± 1.63
2.268GluSer: 2.268 ± 0.866
1.512GluThr: 1.512 ± 1.47
2.268GluVal: 2.268 ± 1.467
0.756GluTrp: 0.756 ± 0.451
0.756GluTyr: 0.756 ± 1.543
0.0GluXaa: 0.0 ± 0.0
Phe
1.512PheAla: 1.512 ± 1.452
1.512PheCys: 1.512 ± 0.795
2.268PheAsp: 2.268 ± 0.831
3.779PheGlu: 3.779 ± 1.756
0.0PhePhe: 0.0 ± 0.0
6.047PheGly: 6.047 ± 1.93
0.0PheHis: 0.0 ± 0.0
1.512PheIle: 1.512 ± 1.98
2.268PheLys: 2.268 ± 1.353
4.535PheLeu: 4.535 ± 1.286
0.756PheMet: 0.756 ± 1.492
1.512PheAsn: 1.512 ± 1.47
1.512PhePro: 1.512 ± 1.732
2.268PheGln: 2.268 ± 0.972
3.023PheArg: 3.023 ± 1.264
1.512PheSer: 1.512 ± 0.902
2.268PheThr: 2.268 ± 0.831
4.535PheVal: 4.535 ± 2.508
0.0PheTrp: 0.0 ± 0.0
4.535PheTyr: 4.535 ± 1.662
0.0PheXaa: 0.0 ± 0.0
Gly
3.779GlyAla: 3.779 ± 1.38
1.512GlyCys: 1.512 ± 0.902
3.023GlyAsp: 3.023 ± 1.264
5.291GlyGlu: 5.291 ± 2.449
3.779GlyPhe: 3.779 ± 1.63
5.291GlyGly: 5.291 ± 1.341
2.268GlyHis: 2.268 ± 0.831
6.803GlyIle: 6.803 ± 2.705
0.0GlyLys: 0.0 ± 0.0
9.07GlyLeu: 9.07 ± 2.044
3.023GlyMet: 3.023 ± 0.666
4.535GlyAsn: 4.535 ± 3.476
2.268GlyPro: 2.268 ± 1.738
3.779GlyGln: 3.779 ± 1.384
2.268GlyArg: 2.268 ± 1.467
1.512GlySer: 1.512 ± 1.47
3.023GlyThr: 3.023 ± 4.0
4.535GlyVal: 4.535 ± 1.612
1.512GlyTrp: 1.512 ± 0.836
2.268GlyTyr: 2.268 ± 1.738
0.0GlyXaa: 0.0 ± 0.0
His
1.512HisAla: 1.512 ± 1.47
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.756HisGlu: 0.756 ± 0.451
3.023HisPhe: 3.023 ± 1.672
0.0HisGly: 0.0 ± 0.0
1.512HisHis: 1.512 ± 1.452
0.756HisIle: 0.756 ± 1.543
1.512HisLys: 1.512 ± 0.836
2.268HisLeu: 2.268 ± 1.353
0.0HisMet: 0.0 ± 0.0
3.023HisAsn: 3.023 ± 1.603
2.268HisPro: 2.268 ± 1.353
1.512HisGln: 1.512 ± 0.795
0.756HisArg: 0.756 ± 0.451
2.268HisSer: 2.268 ± 1.498
0.756HisThr: 0.756 ± 0.451
1.512HisVal: 1.512 ± 0.795
0.0HisTrp: 0.0 ± 0.0
0.756HisTyr: 0.756 ± 0.451
0.0HisXaa: 0.0 ± 0.0
Ile
3.023IleAla: 3.023 ± 2.467
0.0IleCys: 0.0 ± 0.0
0.756IleAsp: 0.756 ± 0.99
4.535IleGlu: 4.535 ± 1.205
1.512IlePhe: 1.512 ± 0.795
3.779IleGly: 3.779 ± 1.63
0.756IleHis: 0.756 ± 0.451
1.512IleIle: 1.512 ± 0.795
1.512IleLys: 1.512 ± 0.795
5.291IleLeu: 5.291 ± 5.929
1.512IleMet: 1.512 ± 0.902
4.535IleAsn: 4.535 ± 1.026
3.023IlePro: 3.023 ± 1.59
1.512IleGln: 1.512 ± 0.795
0.756IleArg: 0.756 ± 0.451
3.779IleSer: 3.779 ± 2.863
5.291IleThr: 5.291 ± 3.007
0.756IleVal: 0.756 ± 0.451
0.0IleTrp: 0.0 ± 0.0
1.512IleTyr: 1.512 ± 0.795
0.0IleXaa: 0.0 ± 0.0
Lys
4.535LysAla: 4.535 ± 1.944
0.756LysCys: 0.756 ± 0.451
2.268LysAsp: 2.268 ± 0.972
2.268LysGlu: 2.268 ± 1.353
3.023LysPhe: 3.023 ± 1.264
0.756LysGly: 0.756 ± 0.451
0.756LysHis: 0.756 ± 1.605
0.0LysIle: 0.0 ± 0.0
3.779LysLys: 3.779 ± 1.832
3.779LysLeu: 3.779 ± 1.562
2.268LysMet: 2.268 ± 1.231
0.756LysAsn: 0.756 ± 0.451
4.535LysPro: 4.535 ± 2.705
5.291LysGln: 5.291 ± 2.21
3.023LysArg: 3.023 ± 2.013
2.268LysSer: 2.268 ± 1.715
5.291LysThr: 5.291 ± 1.076
1.512LysVal: 1.512 ± 0.836
1.512LysTrp: 1.512 ± 0.902
3.779LysTyr: 3.779 ± 0.738
0.756LysXaa: 0.756 ± 0.451
Leu
11.338LeuAla: 11.338 ± 2.598
1.512LeuCys: 1.512 ± 0.836
1.512LeuAsp: 1.512 ± 0.902
3.023LeuGlu: 3.023 ± 1.804
1.512LeuPhe: 1.512 ± 1.732
5.291LeuGly: 5.291 ± 1.403
0.0LeuHis: 0.0 ± 0.0
3.779LeuIle: 3.779 ± 2.917
4.535LeuLys: 4.535 ± 2.705
6.047LeuLeu: 6.047 ± 2.528
3.779LeuMet: 3.779 ± 1.057
3.023LeuAsn: 3.023 ± 1.264
6.047LeuPro: 6.047 ± 2.162
6.047LeuGln: 6.047 ± 1.813
5.291LeuArg: 5.291 ± 1.403
7.559LeuSer: 7.559 ± 2.683
3.779LeuThr: 3.779 ± 1.614
4.535LeuVal: 4.535 ± 2.001
0.756LeuTrp: 0.756 ± 0.99
2.268LeuTyr: 2.268 ± 0.831
0.0LeuXaa: 0.0 ± 0.0
Met
3.023MetAla: 3.023 ± 3.182
0.756MetCys: 0.756 ± 0.451
3.023MetAsp: 3.023 ± 1.59
3.023MetGlu: 3.023 ± 1.264
0.756MetPhe: 0.756 ± 0.451
0.0MetGly: 0.0 ± 0.0
0.756MetHis: 0.756 ± 0.451
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
0.756MetLeu: 0.756 ± 0.451
0.0MetMet: 0.0 ± 0.0
3.023MetAsn: 3.023 ± 1.264
0.0MetPro: 0.0 ± 0.0
1.512MetGln: 1.512 ± 0.795
0.0MetArg: 0.0 ± 0.0
2.268MetSer: 2.268 ± 0.831
0.756MetThr: 0.756 ± 1.605
4.535MetVal: 4.535 ± 1.205
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.512AsnAla: 1.512 ± 0.836
0.756AsnCys: 0.756 ± 0.451
0.756AsnAsp: 0.756 ± 0.451
5.291AsnGlu: 5.291 ± 1.341
3.779AsnPhe: 3.779 ± 3.199
5.291AsnGly: 5.291 ± 3.034
0.756AsnHis: 0.756 ± 0.451
2.268AsnIle: 2.268 ± 1.458
0.756AsnLys: 0.756 ± 0.451
6.047AsnLeu: 6.047 ± 1.93
0.756AsnMet: 0.756 ± 0.43
4.535AsnAsn: 4.535 ± 1.944
2.268AsnPro: 2.268 ± 0.866
2.268AsnGln: 2.268 ± 1.608
3.779AsnArg: 3.779 ± 1.384
4.535AsnSer: 4.535 ± 1.026
3.023AsnThr: 3.023 ± 0.666
4.535AsnVal: 4.535 ± 1.612
1.512AsnTrp: 1.512 ± 0.836
1.512AsnTyr: 1.512 ± 0.795
0.0AsnXaa: 0.0 ± 0.0
Pro
2.268ProAla: 2.268 ± 1.738
0.756ProCys: 0.756 ± 0.451
1.512ProAsp: 1.512 ± 0.902
1.512ProGlu: 1.512 ± 0.902
0.0ProPhe: 0.0 ± 0.0
2.268ProGly: 2.268 ± 1.476
1.512ProHis: 1.512 ± 0.795
0.0ProIle: 0.0 ± 0.0
2.268ProLys: 2.268 ± 0.972
0.756ProLeu: 0.756 ± 0.451
0.0ProMet: 0.0 ± 0.0
6.047ProAsn: 6.047 ± 1.074
2.268ProPro: 2.268 ± 1.738
0.756ProGln: 0.756 ± 0.99
3.023ProArg: 3.023 ± 1.075
3.023ProSer: 3.023 ± 1.328
4.535ProThr: 4.535 ± 3.559
9.826ProVal: 9.826 ± 2.735
1.512ProTrp: 1.512 ± 0.836
2.268ProTyr: 2.268 ± 1.476
0.0ProXaa: 0.0 ± 0.0
Gln
2.268GlnAla: 2.268 ± 0.972
1.512GlnCys: 1.512 ± 0.836
0.756GlnAsp: 0.756 ± 0.451
0.756GlnGlu: 0.756 ± 0.451
1.512GlnPhe: 1.512 ± 0.902
4.535GlnGly: 4.535 ± 2.307
4.535GlnHis: 4.535 ± 2.001
0.0GlnIle: 0.0 ± 0.0
2.268GlnLys: 2.268 ± 1.715
2.268GlnLeu: 2.268 ± 1.353
2.268GlnMet: 2.268 ± 1.738
3.023GlnAsn: 3.023 ± 1.264
3.023GlnPro: 3.023 ± 1.075
3.023GlnGln: 3.023 ± 1.328
5.291GlnArg: 5.291 ± 1.478
2.268GlnSer: 2.268 ± 1.715
6.803GlnThr: 6.803 ± 2.394
2.268GlnVal: 2.268 ± 1.738
0.0GlnTrp: 0.0 ± 0.0
3.779GlnTyr: 3.779 ± 1.324
0.0GlnXaa: 0.0 ± 0.0
Arg
4.535ArgAla: 4.535 ± 1.833
2.268ArgCys: 2.268 ± 1.608
2.268ArgAsp: 2.268 ± 1.353
0.0ArgGlu: 0.0 ± 0.0
1.512ArgPhe: 1.512 ± 0.795
6.047ArgGly: 6.047 ± 2.46
2.268ArgHis: 2.268 ± 1.467
3.779ArgIle: 3.779 ± 3.699
4.535ArgLys: 4.535 ± 1.205
4.535ArgLeu: 4.535 ± 1.944
1.512ArgMet: 1.512 ± 0.795
0.756ArgAsn: 0.756 ± 0.99
0.756ArgPro: 0.756 ± 0.451
3.023ArgGln: 3.023 ± 1.264
6.803ArgArg: 6.803 ± 2.775
3.023ArgSer: 3.023 ± 0.666
6.803ArgThr: 6.803 ± 1.965
6.047ArgVal: 6.047 ± 1.533
1.512ArgTrp: 1.512 ± 1.98
3.779ArgTyr: 3.779 ± 1.832
0.0ArgXaa: 0.0 ± 0.0
Ser
3.023SerAla: 3.023 ± 1.661
0.0SerCys: 0.0 ± 0.0
2.268SerAsp: 2.268 ± 1.738
3.023SerGlu: 3.023 ± 3.215
3.023SerPhe: 3.023 ± 1.661
6.803SerGly: 6.803 ± 1.406
0.756SerHis: 0.756 ± 0.451
4.535SerIle: 4.535 ± 1.06
3.023SerLys: 3.023 ± 1.075
7.559SerLeu: 7.559 ± 2.847
0.756SerMet: 0.756 ± 0.99
3.023SerAsn: 3.023 ± 1.252
6.803SerPro: 6.803 ± 2.379
5.291SerGln: 5.291 ± 3.289
5.291SerArg: 5.291 ± 1.392
2.268SerSer: 2.268 ± 0.972
3.023SerThr: 3.023 ± 2.051
2.268SerVal: 2.268 ± 1.467
2.268SerTrp: 2.268 ± 0.831
0.0SerTyr: 0.0 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.023ThrAla: 3.023 ± 0.666
0.756ThrCys: 0.756 ± 0.99
0.756ThrAsp: 0.756 ± 0.99
4.535ThrGlu: 4.535 ± 3.247
1.512ThrPhe: 1.512 ± 1.98
3.779ThrGly: 3.779 ± 1.614
0.756ThrHis: 0.756 ± 0.451
3.023ThrIle: 3.023 ± 1.597
4.535ThrLys: 4.535 ± 1.026
6.047ThrLeu: 6.047 ± 1.074
0.756ThrMet: 0.756 ± 1.605
3.779ThrAsn: 3.779 ± 1.715
1.512ThrPro: 1.512 ± 1.452
3.779ThrGln: 3.779 ± 2.863
3.779ThrArg: 3.779 ± 1.756
9.07ThrSer: 9.07 ± 1.538
1.512ThrThr: 1.512 ± 1.98
5.291ThrVal: 5.291 ± 2.357
0.0ThrTrp: 0.0 ± 0.0
4.535ThrTyr: 4.535 ± 2.251
0.0ThrXaa: 0.0 ± 0.0
Val
6.803ValAla: 6.803 ± 2.109
3.023ValCys: 3.023 ± 1.328
3.779ValAsp: 3.779 ± 1.562
3.023ValGlu: 3.023 ± 1.264
5.291ValPhe: 5.291 ± 1.403
2.268ValGly: 2.268 ± 1.498
0.0ValHis: 0.0 ± 0.0
3.779ValIle: 3.779 ± 2.515
6.047ValLys: 6.047 ± 2.222
0.756ValLeu: 0.756 ± 0.99
2.268ValMet: 2.268 ± 0.972
5.291ValAsn: 5.291 ± 2.457
3.023ValPro: 3.023 ± 0.666
1.512ValGln: 1.512 ± 0.836
6.803ValArg: 6.803 ± 1.233
6.803ValSer: 6.803 ± 4.035
6.803ValThr: 6.803 ± 1.65
9.826ValVal: 9.826 ± 1.547
0.0ValTrp: 0.0 ± 0.0
0.756ValTyr: 0.756 ± 0.451
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.756TrpAsp: 0.756 ± 0.99
0.756TrpGlu: 0.756 ± 0.451
0.756TrpPhe: 0.756 ± 0.99
1.512TrpGly: 1.512 ± 0.836
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.756TrpLys: 0.756 ± 0.451
3.779TrpLeu: 3.779 ± 0.738
0.0TrpMet: 0.0 ± 0.0
1.512TrpAsn: 1.512 ± 0.836
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
3.023TrpArg: 3.023 ± 0.666
0.756TrpSer: 0.756 ± 1.605
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
1.512TrpTrp: 1.512 ± 0.836
0.756TrpTyr: 0.756 ± 0.99
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.512TyrAla: 1.512 ± 0.795
0.0TyrCys: 0.0 ± 0.0
1.512TyrAsp: 1.512 ± 0.795
3.779TyrGlu: 3.779 ± 1.8
1.512TyrPhe: 1.512 ± 1.452
0.756TyrGly: 0.756 ± 0.451
1.512TyrHis: 1.512 ± 1.452
2.268TyrIle: 2.268 ± 0.831
3.779TyrLys: 3.779 ± 1.593
3.779TyrLeu: 3.779 ± 0.738
0.756TyrMet: 0.756 ± 0.451
1.512TyrAsn: 1.512 ± 1.47
1.512TyrPro: 1.512 ± 0.795
2.268TyrGln: 2.268 ± 1.467
1.512TyrArg: 1.512 ± 1.98
3.779TyrSer: 3.779 ± 0.738
0.756TyrThr: 0.756 ± 0.451
2.268TyrVal: 2.268 ± 0.831
1.512TyrTrp: 1.512 ± 1.759
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.756XaaGly: 0.756 ± 0.451
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1324 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski