Tick-associated genomovirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus ixode1

Average proteome isoelectric point is 7.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D0Y219|A0A2D0Y219_9VIRU Capsid protein OS=Tick-associated genomovirus 3 OX=2025479 PE=4 SV=1
MM1 pKa = 7.52LFCNSKK7 pKa = 10.7YY8 pKa = 11.1VLLTYY13 pKa = 9.13AQCGDD18 pKa = 3.67LDD20 pKa = 3.59EE21 pKa = 4.86WAVSDD26 pKa = 4.61HH27 pKa = 6.68LSSLDD32 pKa = 3.46AEE34 pKa = 4.68CIVARR39 pKa = 11.84EE40 pKa = 4.05IHH42 pKa = 6.23PTTGGVHH49 pKa = 5.86LHH51 pKa = 5.79VFVDD55 pKa = 4.54FGRR58 pKa = 11.84KK59 pKa = 7.9FRR61 pKa = 11.84SRR63 pKa = 11.84RR64 pKa = 11.84VDD66 pKa = 3.24VFDD69 pKa = 4.17VEE71 pKa = 4.89GRR73 pKa = 11.84HH74 pKa = 5.94PNVVPSKK81 pKa = 8.26GTPEE85 pKa = 3.8KK86 pKa = 10.85GYY88 pKa = 10.88DD89 pKa = 3.43YY90 pKa = 10.61AIKK93 pKa = 10.61DD94 pKa = 3.82GEE96 pKa = 4.58VVAGGLARR104 pKa = 11.84PRR106 pKa = 11.84GGRR109 pKa = 11.84PGTLSGLEE117 pKa = 4.48AIAHH121 pKa = 5.74LCEE124 pKa = 4.35TQDD127 pKa = 3.61EE128 pKa = 4.36FLDD131 pKa = 3.72IYY133 pKa = 11.48GEE135 pKa = 3.96VDD137 pKa = 2.94TRR139 pKa = 11.84GLIKK143 pKa = 10.77NFANVRR149 pKa = 11.84SYY151 pKa = 11.76AKK153 pKa = 9.1WRR155 pKa = 11.84YY156 pKa = 9.85ASTLPKK162 pKa = 10.15YY163 pKa = 9.53EE164 pKa = 4.28SPASFGEE171 pKa = 3.93FRR173 pKa = 11.84GGSDD177 pKa = 5.89GRR179 pKa = 11.84DD180 pKa = 2.8QWLAQSGIRR189 pKa = 11.84SNDD192 pKa = 2.91VVRR195 pKa = 11.84PKK197 pKa = 10.96SLVLYY202 pKa = 10.16GPSRR206 pKa = 11.84TGKK209 pKa = 8.43TSWARR214 pKa = 11.84SLGPHH219 pKa = 6.33VYY221 pKa = 10.46FGGAFSGGDD230 pKa = 3.53ALAVDD235 pKa = 5.33DD236 pKa = 4.41DD237 pKa = 4.09VKK239 pKa = 11.4YY240 pKa = 11.03AVFDD244 pKa = 4.0DD245 pKa = 3.88MRR247 pKa = 11.84GGIAFFHH254 pKa = 6.43GWKK257 pKa = 10.0DD258 pKa = 3.13WLGAQQEE265 pKa = 4.97FYY267 pKa = 10.67GQSAVSRR274 pKa = 11.84SKK276 pKa = 10.98SYY278 pKa = 11.19LSGVDD283 pKa = 3.36HH284 pKa = 6.76QFWCANRR291 pKa = 11.84DD292 pKa = 3.29PRR294 pKa = 11.84EE295 pKa = 3.89EE296 pKa = 4.18MEE298 pKa = 4.04CHH300 pKa = 6.07LFKK303 pKa = 10.88GTFCQGDD310 pKa = 4.1IDD312 pKa = 4.15WLNANCVFIEE322 pKa = 4.11VNTPIFHH329 pKa = 7.54ANRR332 pKa = 11.84EE333 pKa = 4.13

Molecular weight: 37.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D0Y219|A0A2D0Y219_9VIRU Capsid protein OS=Tick-associated genomovirus 3 OX=2025479 PE=4 SV=1
MM1 pKa = 7.65PRR3 pKa = 11.84FKK5 pKa = 10.85NRR7 pKa = 11.84RR8 pKa = 11.84TRR10 pKa = 11.84YY11 pKa = 7.83ARR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84VGRR18 pKa = 11.84FNYY21 pKa = 9.84GNKK24 pKa = 9.4FSKK27 pKa = 10.64GKK29 pKa = 10.65GPIRR33 pKa = 11.84RR34 pKa = 11.84TKK36 pKa = 8.5RR37 pKa = 11.84TYY39 pKa = 9.79RR40 pKa = 11.84PKK42 pKa = 8.38MTKK45 pKa = 10.05KK46 pKa = 10.4RR47 pKa = 11.84ILNVTSKK54 pKa = 10.49KK55 pKa = 10.46KK56 pKa = 9.98HH57 pKa = 5.53DD58 pKa = 3.85TMLTTTNISASSQYY72 pKa = 10.82GGSAYY77 pKa = 9.42IQAPAIITGASNAIPIVWCATARR100 pKa = 11.84DD101 pKa = 3.6ASYY104 pKa = 10.87DD105 pKa = 3.5AKK107 pKa = 10.8LANPTDD113 pKa = 3.56TATRR117 pKa = 11.84TAQTCFMRR125 pKa = 11.84GLSEE129 pKa = 4.41KK130 pKa = 10.49IEE132 pKa = 4.01IQVADD137 pKa = 3.81GMPWQWRR144 pKa = 11.84RR145 pKa = 11.84ICFTYY150 pKa = 10.71RR151 pKa = 11.84NLTTLIPNTTEE162 pKa = 3.47AGKK165 pKa = 10.64YY166 pKa = 8.75FYY168 pKa = 10.82SYY170 pKa = 11.35LSIGNLGYY178 pKa = 10.9NRR180 pKa = 11.84VLNMLPHH187 pKa = 6.88PDD189 pKa = 2.83IVATLEE195 pKa = 4.12SVLFRR200 pKa = 11.84GVKK203 pKa = 10.03GKK205 pKa = 9.93DD206 pKa = 2.92WQSAMIAAVDD216 pKa = 3.82RR217 pKa = 11.84LRR219 pKa = 11.84VDD221 pKa = 3.85LKK223 pKa = 10.31YY224 pKa = 11.32DD225 pKa = 3.3KK226 pKa = 10.49TITIASGNEE235 pKa = 3.56DD236 pKa = 3.37GVIRR240 pKa = 11.84KK241 pKa = 8.44YY242 pKa = 11.15SRR244 pKa = 11.84WHH246 pKa = 5.81GMNKK250 pKa = 9.58NLVYY254 pKa = 10.79ADD256 pKa = 4.45DD257 pKa = 4.05EE258 pKa = 5.13SGGEE262 pKa = 4.09MIEE265 pKa = 4.69AYY267 pKa = 10.4HH268 pKa = 6.25SVSDD272 pKa = 3.58KK273 pKa = 11.21RR274 pKa = 11.84GMGDD278 pKa = 3.51YY279 pKa = 11.07YY280 pKa = 10.34IVDD283 pKa = 3.77YY284 pKa = 9.16FAPRR288 pKa = 11.84AGATSSNQISVGMSSTLYY306 pKa = 8.84WHH308 pKa = 7.07EE309 pKa = 4.1KK310 pKa = 9.32

Molecular weight: 35.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1020

310

377

340.0

38.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.941 ± 0.189

1.961 ± 0.378

6.667 ± 0.587

4.51 ± 0.608

4.902 ± 0.881

9.804 ± 0.912

2.647 ± 0.393

4.314 ± 0.943

5.098 ± 0.761

6.667 ± 0.628

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.765 ± 0.676

3.824 ± 0.507

3.725 ± 0.076

2.745 ± 0.231

7.647 ± 0.408

7.353 ± 0.056

5.0 ± 1.298

6.667 ± 0.694

2.255 ± 0.121

4.51 ± 0.625
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski