Amino acid dipepetide frequency for Wenzhou picorna-like virus 25

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.797AlaAla: 5.797 ± 0.0
1.087AlaCys: 1.087 ± 0.0
5.435AlaAsp: 5.435 ± 0.0
5.072AlaGlu: 5.072 ± 0.0
2.899AlaPhe: 2.899 ± 0.0
7.609AlaGly: 7.609 ± 0.0
1.087AlaHis: 1.087 ± 0.0
5.072AlaIle: 5.072 ± 0.0
2.174AlaLys: 2.174 ± 0.0
3.261AlaLeu: 3.261 ± 0.0
1.087AlaMet: 1.087 ± 0.0
5.072AlaAsn: 5.072 ± 0.0
2.899AlaPro: 2.899 ± 0.0
3.623AlaGln: 3.623 ± 0.0
3.261AlaArg: 3.261 ± 0.0
6.159AlaSer: 6.159 ± 0.0
3.623AlaThr: 3.623 ± 0.0
3.986AlaVal: 3.986 ± 0.0
1.449AlaTrp: 1.449 ± 0.0
2.536AlaTyr: 2.536 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.087CysAla: 1.087 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.725CysAsp: 0.725 ± 0.0
1.087CysGlu: 1.087 ± 0.0
1.087CysPhe: 1.087 ± 0.0
2.174CysGly: 2.174 ± 0.0
0.362CysHis: 0.362 ± 0.0
0.362CysIle: 0.362 ± 0.0
1.087CysLys: 1.087 ± 0.0
1.087CysLeu: 1.087 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.362CysAsn: 0.362 ± 0.0
1.449CysPro: 1.449 ± 0.0
0.362CysGln: 0.362 ± 0.0
1.449CysArg: 1.449 ± 0.0
0.362CysSer: 0.362 ± 0.0
2.174CysThr: 2.174 ± 0.0
1.812CysVal: 1.812 ± 0.0
0.362CysTrp: 0.362 ± 0.0
0.725CysTyr: 0.725 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.536AspAla: 2.536 ± 0.0
0.725AspCys: 0.725 ± 0.0
2.536AspAsp: 2.536 ± 0.0
3.261AspGlu: 3.261 ± 0.0
4.348AspPhe: 4.348 ± 0.0
5.072AspGly: 5.072 ± 0.0
0.725AspHis: 0.725 ± 0.0
3.986AspIle: 3.986 ± 0.0
2.174AspLys: 2.174 ± 0.0
2.899AspLeu: 2.899 ± 0.0
1.087AspMet: 1.087 ± 0.0
2.536AspAsn: 2.536 ± 0.0
1.449AspPro: 1.449 ± 0.0
2.536AspGln: 2.536 ± 0.0
3.986AspArg: 3.986 ± 0.0
3.261AspSer: 3.261 ± 0.0
3.986AspThr: 3.986 ± 0.0
5.072AspVal: 5.072 ± 0.0
2.536AspTrp: 2.536 ± 0.0
3.261AspTyr: 3.261 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.348GluAla: 4.348 ± 0.0
0.725GluCys: 0.725 ± 0.0
2.899GluAsp: 2.899 ± 0.0
5.797GluGlu: 5.797 ± 0.0
2.899GluPhe: 2.899 ± 0.0
1.812GluGly: 1.812 ± 0.0
1.449GluHis: 1.449 ± 0.0
1.812GluIle: 1.812 ± 0.0
3.261GluLys: 3.261 ± 0.0
4.348GluLeu: 4.348 ± 0.0
2.899GluMet: 2.899 ± 0.0
2.536GluAsn: 2.536 ± 0.0
2.174GluPro: 2.174 ± 0.0
1.812GluGln: 1.812 ± 0.0
1.449GluArg: 1.449 ± 0.0
5.072GluSer: 5.072 ± 0.0
3.986GluThr: 3.986 ± 0.0
6.159GluVal: 6.159 ± 0.0
1.449GluTrp: 1.449 ± 0.0
3.261GluTyr: 3.261 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.087PheAla: 1.087 ± 0.0
0.725PheCys: 0.725 ± 0.0
2.899PheAsp: 2.899 ± 0.0
2.536PheGlu: 2.536 ± 0.0
1.449PhePhe: 1.449 ± 0.0
2.536PheGly: 2.536 ± 0.0
1.087PheHis: 1.087 ± 0.0
2.174PheIle: 2.174 ± 0.0
2.174PheLys: 2.174 ± 0.0
4.71PheLeu: 4.71 ± 0.0
0.725PheMet: 0.725 ± 0.0
0.725PheAsn: 0.725 ± 0.0
1.087PhePro: 1.087 ± 0.0
1.449PheGln: 1.449 ± 0.0
5.435PheArg: 5.435 ± 0.0
6.159PheSer: 6.159 ± 0.0
3.986PheThr: 3.986 ± 0.0
5.072PheVal: 5.072 ± 0.0
0.0PheTrp: 0.0 ± 0.0
0.725PheTyr: 0.725 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
5.072GlyAla: 5.072 ± 0.0
1.087GlyCys: 1.087 ± 0.0
3.986GlyAsp: 3.986 ± 0.0
6.159GlyGlu: 6.159 ± 0.0
3.623GlyPhe: 3.623 ± 0.0
4.71GlyGly: 4.71 ± 0.0
0.362GlyHis: 0.362 ± 0.0
3.261GlyIle: 3.261 ± 0.0
3.261GlyLys: 3.261 ± 0.0
5.797GlyLeu: 5.797 ± 0.0
1.449GlyMet: 1.449 ± 0.0
2.536GlyAsn: 2.536 ± 0.0
3.986GlyPro: 3.986 ± 0.0
1.449GlyGln: 1.449 ± 0.0
3.623GlyArg: 3.623 ± 0.0
6.522GlySer: 6.522 ± 0.0
6.522GlyThr: 6.522 ± 0.0
4.71GlyVal: 4.71 ± 0.0
0.362GlyTrp: 0.362 ± 0.0
1.449GlyTyr: 1.449 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.449HisAla: 1.449 ± 0.0
0.725HisCys: 0.725 ± 0.0
0.725HisAsp: 0.725 ± 0.0
0.362HisGlu: 0.362 ± 0.0
1.449HisPhe: 1.449 ± 0.0
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
1.449HisIle: 1.449 ± 0.0
1.087HisLys: 1.087 ± 0.0
2.174HisLeu: 2.174 ± 0.0
0.362HisMet: 0.362 ± 0.0
0.725HisAsn: 0.725 ± 0.0
1.812HisPro: 1.812 ± 0.0
0.0HisGln: 0.0 ± 0.0
2.536HisArg: 2.536 ± 0.0
1.087HisSer: 1.087 ± 0.0
0.0HisThr: 0.0 ± 0.0
2.536HisVal: 2.536 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.725HisTyr: 0.725 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.986IleAla: 3.986 ± 0.0
1.449IleCys: 1.449 ± 0.0
2.899IleAsp: 2.899 ± 0.0
3.261IleGlu: 3.261 ± 0.0
1.449IlePhe: 1.449 ± 0.0
3.623IleGly: 3.623 ± 0.0
0.362IleHis: 0.362 ± 0.0
0.725IleIle: 0.725 ± 0.0
1.812IleLys: 1.812 ± 0.0
1.812IleLeu: 1.812 ± 0.0
1.087IleMet: 1.087 ± 0.0
2.174IleAsn: 2.174 ± 0.0
2.536IlePro: 2.536 ± 0.0
2.174IleGln: 2.174 ± 0.0
4.348IleArg: 4.348 ± 0.0
5.072IleSer: 5.072 ± 0.0
1.812IleThr: 1.812 ± 0.0
3.623IleVal: 3.623 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.449IleTyr: 1.449 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.986LysAla: 3.986 ± 0.0
1.087LysCys: 1.087 ± 0.0
2.536LysAsp: 2.536 ± 0.0
2.899LysGlu: 2.899 ± 0.0
2.536LysPhe: 2.536 ± 0.0
2.174LysGly: 2.174 ± 0.0
1.449LysHis: 1.449 ± 0.0
2.536LysIle: 2.536 ± 0.0
3.261LysLys: 3.261 ± 0.0
3.986LysLeu: 3.986 ± 0.0
2.536LysMet: 2.536 ± 0.0
1.087LysAsn: 1.087 ± 0.0
1.812LysPro: 1.812 ± 0.0
0.725LysGln: 0.725 ± 0.0
2.536LysArg: 2.536 ± 0.0
2.899LysSer: 2.899 ± 0.0
3.261LysThr: 3.261 ± 0.0
3.986LysVal: 3.986 ± 0.0
0.0LysTrp: 0.0 ± 0.0
0.725LysTyr: 0.725 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
2.899LeuAla: 2.899 ± 0.0
0.0LeuCys: 0.0 ± 0.0
5.435LeuAsp: 5.435 ± 0.0
1.087LeuGlu: 1.087 ± 0.0
1.812LeuPhe: 1.812 ± 0.0
4.71LeuGly: 4.71 ± 0.0
2.536LeuHis: 2.536 ± 0.0
2.174LeuIle: 2.174 ± 0.0
2.536LeuLys: 2.536 ± 0.0
2.536LeuLeu: 2.536 ± 0.0
2.899LeuMet: 2.899 ± 0.0
3.986LeuAsn: 3.986 ± 0.0
5.435LeuPro: 5.435 ± 0.0
1.812LeuGln: 1.812 ± 0.0
4.71LeuArg: 4.71 ± 0.0
6.522LeuSer: 6.522 ± 0.0
6.159LeuThr: 6.159 ± 0.0
6.159LeuVal: 6.159 ± 0.0
1.812LeuTrp: 1.812 ± 0.0
3.261LeuTyr: 3.261 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
3.261MetAla: 3.261 ± 0.0
0.725MetCys: 0.725 ± 0.0
1.449MetAsp: 1.449 ± 0.0
2.536MetGlu: 2.536 ± 0.0
0.0MetPhe: 0.0 ± 0.0
2.174MetGly: 2.174 ± 0.0
0.362MetHis: 0.362 ± 0.0
2.899MetIle: 2.899 ± 0.0
1.087MetLys: 1.087 ± 0.0
0.725MetLeu: 0.725 ± 0.0
1.449MetMet: 1.449 ± 0.0
1.812MetAsn: 1.812 ± 0.0
1.812MetPro: 1.812 ± 0.0
0.725MetGln: 0.725 ± 0.0
0.362MetArg: 0.362 ± 0.0
1.812MetSer: 1.812 ± 0.0
0.725MetThr: 0.725 ± 0.0
1.449MetVal: 1.449 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.362MetTyr: 0.362 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.174AsnAla: 2.174 ± 0.0
1.812AsnCys: 1.812 ± 0.0
1.812AsnAsp: 1.812 ± 0.0
2.174AsnGlu: 2.174 ± 0.0
1.449AsnPhe: 1.449 ± 0.0
1.812AsnGly: 1.812 ± 0.0
1.087AsnHis: 1.087 ± 0.0
0.725AsnIle: 0.725 ± 0.0
3.261AsnLys: 3.261 ± 0.0
3.261AsnLeu: 3.261 ± 0.0
1.449AsnMet: 1.449 ± 0.0
2.899AsnAsn: 2.899 ± 0.0
1.812AsnPro: 1.812 ± 0.0
0.725AsnGln: 0.725 ± 0.0
3.986AsnArg: 3.986 ± 0.0
2.899AsnSer: 2.899 ± 0.0
3.623AsnThr: 3.623 ± 0.0
3.986AsnVal: 3.986 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
0.362AsnTyr: 0.362 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
6.522ProAla: 6.522 ± 0.0
0.725ProCys: 0.725 ± 0.0
2.174ProAsp: 2.174 ± 0.0
2.899ProGlu: 2.899 ± 0.0
1.449ProPhe: 1.449 ± 0.0
3.261ProGly: 3.261 ± 0.0
0.362ProHis: 0.362 ± 0.0
2.536ProIle: 2.536 ± 0.0
2.899ProLys: 2.899 ± 0.0
4.71ProLeu: 4.71 ± 0.0
0.725ProMet: 0.725 ± 0.0
1.812ProAsn: 1.812 ± 0.0
2.174ProPro: 2.174 ± 0.0
1.087ProGln: 1.087 ± 0.0
2.174ProArg: 2.174 ± 0.0
4.71ProSer: 4.71 ± 0.0
4.348ProThr: 4.348 ± 0.0
2.899ProVal: 2.899 ± 0.0
1.087ProTrp: 1.087 ± 0.0
2.899ProTyr: 2.899 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.536GlnAla: 2.536 ± 0.0
0.725GlnCys: 0.725 ± 0.0
2.174GlnAsp: 2.174 ± 0.0
2.899GlnGlu: 2.899 ± 0.0
1.449GlnPhe: 1.449 ± 0.0
3.623GlnGly: 3.623 ± 0.0
0.362GlnHis: 0.362 ± 0.0
0.725GlnIle: 0.725 ± 0.0
2.536GlnLys: 2.536 ± 0.0
1.449GlnLeu: 1.449 ± 0.0
0.362GlnMet: 0.362 ± 0.0
2.174GlnAsn: 2.174 ± 0.0
1.449GlnPro: 1.449 ± 0.0
0.725GlnGln: 0.725 ± 0.0
2.174GlnArg: 2.174 ± 0.0
3.623GlnSer: 3.623 ± 0.0
0.725GlnThr: 0.725 ± 0.0
1.812GlnVal: 1.812 ± 0.0
0.725GlnTrp: 0.725 ± 0.0
0.362GlnTyr: 0.362 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.261ArgAla: 3.261 ± 0.0
2.174ArgCys: 2.174 ± 0.0
2.899ArgAsp: 2.899 ± 0.0
3.261ArgGlu: 3.261 ± 0.0
5.797ArgPhe: 5.797 ± 0.0
3.261ArgGly: 3.261 ± 0.0
1.812ArgHis: 1.812 ± 0.0
3.986ArgIle: 3.986 ± 0.0
3.986ArgLys: 3.986 ± 0.0
5.435ArgLeu: 5.435 ± 0.0
1.087ArgMet: 1.087 ± 0.0
1.087ArgAsn: 1.087 ± 0.0
2.536ArgPro: 2.536 ± 0.0
2.174ArgGln: 2.174 ± 0.0
3.623ArgArg: 3.623 ± 0.0
4.348ArgSer: 4.348 ± 0.0
2.899ArgThr: 2.899 ± 0.0
5.797ArgVal: 5.797 ± 0.0
1.087ArgTrp: 1.087 ± 0.0
2.174ArgTyr: 2.174 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.159SerAla: 6.159 ± 0.0
1.812SerCys: 1.812 ± 0.0
3.986SerAsp: 3.986 ± 0.0
5.435SerGlu: 5.435 ± 0.0
3.623SerPhe: 3.623 ± 0.0
6.522SerGly: 6.522 ± 0.0
0.725SerHis: 0.725 ± 0.0
3.986SerIle: 3.986 ± 0.0
3.623SerLys: 3.623 ± 0.0
6.884SerLeu: 6.884 ± 0.0
0.362SerMet: 0.362 ± 0.0
1.449SerAsn: 1.449 ± 0.0
4.71SerPro: 4.71 ± 0.0
3.986SerGln: 3.986 ± 0.0
4.71SerArg: 4.71 ± 0.0
7.971SerSer: 7.971 ± 0.0
4.348SerThr: 4.348 ± 0.0
6.159SerVal: 6.159 ± 0.0
1.087SerTrp: 1.087 ± 0.0
3.261SerTyr: 3.261 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
6.159ThrAla: 6.159 ± 0.0
1.087ThrCys: 1.087 ± 0.0
4.71ThrAsp: 4.71 ± 0.0
3.261ThrGlu: 3.261 ± 0.0
2.174ThrPhe: 2.174 ± 0.0
6.522ThrGly: 6.522 ± 0.0
1.812ThrHis: 1.812 ± 0.0
2.899ThrIle: 2.899 ± 0.0
2.536ThrLys: 2.536 ± 0.0
3.986ThrLeu: 3.986 ± 0.0
1.812ThrMet: 1.812 ± 0.0
2.174ThrAsn: 2.174 ± 0.0
3.986ThrPro: 3.986 ± 0.0
1.449ThrGln: 1.449 ± 0.0
3.623ThrArg: 3.623 ± 0.0
4.348ThrSer: 4.348 ± 0.0
4.71ThrThr: 4.71 ± 0.0
5.797ThrVal: 5.797 ± 0.0
0.362ThrTrp: 0.362 ± 0.0
3.986ThrTyr: 3.986 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
6.884ValAla: 6.884 ± 0.0
0.362ValCys: 0.362 ± 0.0
3.623ValAsp: 3.623 ± 0.0
4.348ValGlu: 4.348 ± 0.0
3.623ValPhe: 3.623 ± 0.0
5.435ValGly: 5.435 ± 0.0
1.449ValHis: 1.449 ± 0.0
3.261ValIle: 3.261 ± 0.0
2.536ValLys: 2.536 ± 0.0
5.072ValLeu: 5.072 ± 0.0
2.174ValMet: 2.174 ± 0.0
2.536ValAsn: 2.536 ± 0.0
6.884ValPro: 6.884 ± 0.0
4.348ValGln: 4.348 ± 0.0
6.522ValArg: 6.522 ± 0.0
4.71ValSer: 4.71 ± 0.0
6.522ValThr: 6.522 ± 0.0
6.522ValVal: 6.522 ± 0.0
1.087ValTrp: 1.087 ± 0.0
3.986ValTyr: 3.986 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.449TrpAla: 1.449 ± 0.0
0.362TrpCys: 0.362 ± 0.0
0.725TrpAsp: 0.725 ± 0.0
0.725TrpGlu: 0.725 ± 0.0
0.725TrpPhe: 0.725 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.725TrpHis: 0.725 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.725TrpLeu: 0.725 ± 0.0
1.087TrpMet: 1.087 ± 0.0
1.449TrpAsn: 1.449 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.087TrpArg: 1.087 ± 0.0
1.812TrpSer: 1.812 ± 0.0
2.536TrpThr: 2.536 ± 0.0
1.087TrpVal: 1.087 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.536TyrAla: 2.536 ± 0.0
0.725TyrCys: 0.725 ± 0.0
4.348TyrAsp: 4.348 ± 0.0
1.087TyrGlu: 1.087 ± 0.0
2.899TyrPhe: 2.899 ± 0.0
2.899TyrGly: 2.899 ± 0.0
1.087TyrHis: 1.087 ± 0.0
1.087TyrIle: 1.087 ± 0.0
0.725TyrLys: 0.725 ± 0.0
3.623TyrLeu: 3.623 ± 0.0
0.725TyrMet: 0.725 ± 0.0
2.174TyrAsn: 2.174 ± 0.0
1.449TyrPro: 1.449 ± 0.0
1.449TyrGln: 1.449 ± 0.0
1.087TyrArg: 1.087 ± 0.0
1.812TyrSer: 1.812 ± 0.0
1.449TyrThr: 1.449 ± 0.0
3.261TyrVal: 3.261 ± 0.0
1.087TyrTrp: 1.087 ± 0.0
0.725TyrTyr: 0.725 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2761 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski