Tick-associated genomovirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykolovirus; Gemykolovirus derva1

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D0Y767|A0A2D0Y767_9VIRU Capsid protein OS=Tick-associated genomovirus 2 OX=2025478 PE=4 SV=1
MM1 pKa = 6.83PAKK4 pKa = 10.37YY5 pKa = 10.16KK6 pKa = 10.83LDD8 pKa = 3.76GEE10 pKa = 4.52QFFMLTYY17 pKa = 7.49PTTPADD23 pKa = 3.72FDD25 pKa = 4.2GSGIIAILEE34 pKa = 3.9RR35 pKa = 11.84LGCNYY40 pKa = 10.01RR41 pKa = 11.84VGRR44 pKa = 11.84EE45 pKa = 3.75LHH47 pKa = 6.22QDD49 pKa = 3.86GKK51 pKa = 9.59PHH53 pKa = 6.0FHH55 pKa = 7.08AMCCFDD61 pKa = 4.56EE62 pKa = 5.53PYY64 pKa = 10.51TDD66 pKa = 3.48GDD68 pKa = 3.27ARR70 pKa = 11.84RR71 pKa = 11.84TFTVGTRR78 pKa = 11.84IPNIRR83 pKa = 11.84VRR85 pKa = 11.84RR86 pKa = 11.84TRR88 pKa = 11.84PEE90 pKa = 3.95RR91 pKa = 11.84GWDD94 pKa = 3.51YY95 pKa = 11.19VGKK98 pKa = 9.63HH99 pKa = 5.89AGTKK103 pKa = 9.13EE104 pKa = 3.65GHH106 pKa = 6.76HH107 pKa = 6.11IVGEE111 pKa = 4.1KK112 pKa = 8.63GTRR115 pKa = 11.84PGGDD119 pKa = 3.31EE120 pKa = 4.56DD121 pKa = 4.55SSEE124 pKa = 4.19RR125 pKa = 11.84PSNDD129 pKa = 2.18SWHH132 pKa = 6.69EE133 pKa = 3.93IILARR138 pKa = 11.84TRR140 pKa = 11.84EE141 pKa = 4.05EE142 pKa = 4.16FFDD145 pKa = 3.77LAARR149 pKa = 11.84LAPRR153 pKa = 11.84QLACSFTSLSAYY165 pKa = 10.31ADD167 pKa = 3.13WKK169 pKa = 9.38YY170 pKa = 11.03RR171 pKa = 11.84PVKK174 pKa = 10.14EE175 pKa = 4.46EE176 pKa = 4.05YY177 pKa = 8.66VTPEE181 pKa = 4.37GDD183 pKa = 2.63WSVPFEE189 pKa = 4.18LQDD192 pKa = 3.37WVDD195 pKa = 3.82DD196 pKa = 4.3NVRR199 pKa = 11.84GTPGRR204 pKa = 11.84PKK206 pKa = 10.84GLVLFGATRR215 pKa = 11.84LGKK218 pKa = 7.65TVWARR223 pKa = 11.84SLGSHH228 pKa = 6.62YY229 pKa = 10.68YY230 pKa = 10.71AGGLWDD236 pKa = 3.64MAEE239 pKa = 4.13FHH241 pKa = 6.57PQEE244 pKa = 3.81QEE246 pKa = 3.79YY247 pKa = 10.64AIWDD251 pKa = 3.83DD252 pKa = 3.55MLGGLKK258 pKa = 10.24AGYY261 pKa = 9.78FNYY264 pKa = 10.28KK265 pKa = 9.29NWLGGQFAFTIQDD278 pKa = 3.08KK279 pKa = 10.49YY280 pKa = 11.37GKK282 pKa = 9.7KK283 pKa = 10.23KK284 pKa = 10.01SIKK287 pKa = 8.46WGKK290 pKa = 9.46PSIFICNVDD299 pKa = 3.93PRR301 pKa = 11.84DD302 pKa = 3.76EE303 pKa = 4.4PPAFNDD309 pKa = 3.36RR310 pKa = 11.84VGMDD314 pKa = 3.5WAWLEE319 pKa = 4.27EE320 pKa = 3.93NCVFYY325 pKa = 10.42EE326 pKa = 4.07VKK328 pKa = 10.41EE329 pKa = 4.29AIFRR333 pKa = 11.84ASTEE337 pKa = 3.81

Molecular weight: 38.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D0Y767|A0A2D0Y767_9VIRU Capsid protein OS=Tick-associated genomovirus 2 OX=2025478 PE=4 SV=1
MM1 pKa = 7.9AYY3 pKa = 8.65TRR5 pKa = 11.84KK6 pKa = 9.66RR7 pKa = 11.84RR8 pKa = 11.84YY9 pKa = 6.82TRR11 pKa = 11.84RR12 pKa = 11.84SYY14 pKa = 11.46GSSKK18 pKa = 10.65AKK20 pKa = 9.08KK21 pKa = 5.11TTRR24 pKa = 11.84PSARR28 pKa = 11.84RR29 pKa = 11.84YY30 pKa = 9.61RR31 pKa = 11.84STGRR35 pKa = 11.84TRR37 pKa = 11.84RR38 pKa = 11.84SIRR41 pKa = 11.84KK42 pKa = 8.78APMSKK47 pKa = 9.85RR48 pKa = 11.84RR49 pKa = 11.84ILNTSSRR56 pKa = 11.84KK57 pKa = 9.32KK58 pKa = 10.23RR59 pKa = 11.84NGMLSWSNTTTSGSVRR75 pKa = 11.84APAIGPAYY83 pKa = 10.74VNGAVGGFFAWQATAQQLDD102 pKa = 3.91AQSTIANQATRR113 pKa = 11.84TATTCYY119 pKa = 9.1MKK121 pKa = 10.88GLAEE125 pKa = 4.26HH126 pKa = 6.77LRR128 pKa = 11.84IQTSSGLPWFHH139 pKa = 6.88RR140 pKa = 11.84RR141 pKa = 11.84VCFTLKK147 pKa = 10.61GINAFNSALSTDD159 pKa = 3.88TPNFPISYY167 pKa = 10.37YY168 pKa = 10.61VDD170 pKa = 3.1TSNGIEE176 pKa = 3.89RR177 pKa = 11.84LWQNEE182 pKa = 4.22QINNMPNTLNAQWSLLFKK200 pKa = 10.51GTVDD204 pKa = 4.75KK205 pKa = 11.13DD206 pKa = 3.23WNDD209 pKa = 3.69YY210 pKa = 10.58IIAPIDD216 pKa = 3.48TTRR219 pKa = 11.84VSVKK223 pKa = 10.02FDD225 pKa = 3.5KK226 pKa = 10.39TWTMQSGNSSGIVRR240 pKa = 11.84EE241 pKa = 4.05RR242 pKa = 11.84KK243 pKa = 8.79LWHH246 pKa = 6.56PMNHH250 pKa = 5.87NLVYY254 pKa = 10.86DD255 pKa = 4.19DD256 pKa = 5.71DD257 pKa = 4.83EE258 pKa = 6.49NGDD261 pKa = 4.11IEE263 pKa = 4.56SSSYY267 pKa = 11.64NSTTSKK273 pKa = 11.16AGMGDD278 pKa = 3.79YY279 pKa = 10.85YY280 pKa = 10.99VIDD283 pKa = 3.37MFQRR287 pKa = 11.84RR288 pKa = 11.84SRR290 pKa = 11.84WIKK293 pKa = 10.06YY294 pKa = 9.24GSSQITTNSTLYY306 pKa = 9.27WHH308 pKa = 7.04EE309 pKa = 4.08KK310 pKa = 9.32

Molecular weight: 35.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

886

239

337

295.3

33.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.885 ± 0.112

1.58 ± 0.451

6.433 ± 0.888

5.418 ± 1.488

4.289 ± 0.744

8.465 ± 1.088

2.37 ± 0.351

4.74 ± 0.367

5.192 ± 0.488

6.095 ± 0.708

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.144 ± 0.351

3.837 ± 1.363

5.079 ± 0.857

2.709 ± 0.549

8.691 ± 0.604

6.659 ± 2.01

7.336 ± 1.418

4.515 ± 0.462

3.047 ± 0.333

4.515 ± 0.157
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski