Neodiprion abietis NPV

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Gammabaculovirus; unclassified Gammabaculovirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 93 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q0ZNZ4|Q0ZNZ4_9CBAC Uncharacterized protein OS=Neodiprion abietis NPV OX=204507 PE=4 SV=1
MM1 pKa = 7.15FLIVFVFLCILLIFFTHH18 pKa = 6.78NIFVEE23 pKa = 4.5TTDD26 pKa = 5.28DD27 pKa = 3.41VTKK30 pKa = 10.85YY31 pKa = 10.56KK32 pKa = 10.47QIHH35 pKa = 5.9NLLLEE40 pKa = 5.03AYY42 pKa = 8.66TSDD45 pKa = 3.44LVSFDD50 pKa = 3.38TVSFISRR57 pKa = 11.84VRR59 pKa = 11.84WPVYY63 pKa = 9.95EE64 pKa = 3.67IVTFEE69 pKa = 4.26TEE71 pKa = 4.36TYY73 pKa = 10.93TMTNNMWYY81 pKa = 10.22SGLEE85 pKa = 3.72KK86 pKa = 10.51RR87 pKa = 11.84FNFYY91 pKa = 10.83NQTFEE96 pKa = 5.61DD97 pKa = 3.56VDD99 pKa = 4.26DD100 pKa = 4.07NAEE103 pKa = 3.96RR104 pKa = 11.84VTTVDD109 pKa = 3.08STSFSLHH116 pKa = 6.72VDD118 pKa = 3.78DD119 pKa = 5.42GWVNVDD125 pKa = 4.36CPANMIFDD133 pKa = 5.21GYY135 pKa = 10.73QCVRR139 pKa = 11.84QNICEE144 pKa = 4.03NQTAGTILPVNEE156 pKa = 4.32ALIDD160 pKa = 3.4VAFYY164 pKa = 10.92QKK166 pKa = 10.9YY167 pKa = 9.77NRR169 pKa = 11.84STTTDD174 pKa = 3.78TIYY177 pKa = 10.88HH178 pKa = 5.49PTLYY182 pKa = 9.83IVCNGDD188 pKa = 2.98DD189 pKa = 3.36TYY191 pKa = 11.36EE192 pKa = 4.78IKK194 pKa = 10.8EE195 pKa = 4.22CDD197 pKa = 3.35NNQLFDD203 pKa = 4.76SEE205 pKa = 4.53MLQCVDD211 pKa = 4.57KK212 pKa = 11.03DD213 pKa = 3.45ACADD217 pKa = 3.49VADD220 pKa = 4.28YY221 pKa = 10.35FVLSDD226 pKa = 4.96RR227 pKa = 11.84PDD229 pKa = 3.29TLADD233 pKa = 4.4DD234 pKa = 4.76EE235 pKa = 5.75YY236 pKa = 11.89LMCLNNEE243 pKa = 4.34TTVQTCEE250 pKa = 3.53EE251 pKa = 3.97NMIFDD256 pKa = 4.43TTTLSCVEE264 pKa = 4.05VDD266 pKa = 3.67LCQANGVGYY275 pKa = 8.32TYY277 pKa = 9.62ITDD280 pKa = 4.1DD281 pKa = 3.74LAANQYY287 pKa = 8.4YY288 pKa = 9.75RR289 pKa = 11.84CTSVFDD295 pKa = 4.25KK296 pKa = 10.98EE297 pKa = 4.8IVSCPIRR304 pKa = 11.84VEE306 pKa = 3.72TDD308 pKa = 3.01GQYY311 pKa = 11.11SCAGDD316 pKa = 3.92TQCMSLEE323 pKa = 4.27NGSGSIVTMTEE334 pKa = 3.6NTHH337 pKa = 6.25FKK339 pKa = 9.89YY340 pKa = 10.75ASEE343 pKa = 4.14AVICTEE349 pKa = 4.3YY350 pKa = 10.72EE351 pKa = 3.76ITDD354 pKa = 4.14SIVCDD359 pKa = 3.72SEE361 pKa = 4.64EE362 pKa = 4.28VEE364 pKa = 4.75LSVEE368 pKa = 4.22PFTLDD373 pKa = 3.43LKK375 pKa = 10.97IPTTILDD382 pKa = 3.59RR383 pKa = 11.84TNNVCKK389 pKa = 10.06TFDD392 pKa = 3.49INDD395 pKa = 3.32VEE397 pKa = 5.22IITDD401 pKa = 3.37YY402 pKa = 11.59AGIVNSEE409 pKa = 3.3NDD411 pKa = 3.5YY412 pKa = 11.57NVDD415 pKa = 3.34FTTAVRR421 pKa = 11.84VNVQNLLSEE430 pKa = 4.39NLPVSTSMLFSSLDD444 pKa = 3.32YY445 pKa = 10.88AKK447 pKa = 10.67NYY449 pKa = 10.01GFIGFSPLTGNEE461 pKa = 3.57IDD463 pKa = 4.34CYY465 pKa = 11.34GDD467 pKa = 3.13ILFDD471 pKa = 3.61IFAGDD476 pKa = 3.85KK477 pKa = 11.29YY478 pKa = 11.08NICSDD483 pKa = 3.91NEE485 pKa = 4.04ISSSNAIDD493 pKa = 4.02DD494 pKa = 4.24NEE496 pKa = 4.13FFSTYY501 pKa = 8.04TKK503 pKa = 11.03NVGTTTLTSPCRR515 pKa = 11.84VKK517 pKa = 10.98SDD519 pKa = 3.15IVLEE523 pKa = 4.04DD524 pKa = 4.88DD525 pKa = 4.88IYY527 pKa = 10.99IQEE530 pKa = 4.14SDD532 pKa = 3.74NVSVSCLYY540 pKa = 11.18AMPLQEE546 pKa = 5.9IIVTDD551 pKa = 4.04LEE553 pKa = 4.13EE554 pKa = 4.18AAGVLIDD561 pKa = 5.45DD562 pKa = 4.45KK563 pKa = 11.29CSEE566 pKa = 4.45NGIDD570 pKa = 3.87LNNVAGAIVILNDD583 pKa = 3.2EE584 pKa = 4.31LACRR588 pKa = 11.84SVYY591 pKa = 10.89LEE593 pKa = 4.92DD594 pKa = 3.72YY595 pKa = 10.71NVIITASFTPTMKK608 pKa = 10.76FEE610 pKa = 4.59DD611 pKa = 3.96RR612 pKa = 11.84TWNVDD617 pKa = 3.19TQSYY621 pKa = 10.09DD622 pKa = 2.77GVMYY626 pKa = 10.53DD627 pKa = 3.92SVVHH631 pKa = 6.89KK632 pKa = 10.23ITDD635 pKa = 2.99GWMACPPSAYY645 pKa = 10.33DD646 pKa = 4.93KK647 pKa = 8.26TTTDD651 pKa = 3.98CNIDD655 pKa = 3.36NTKK658 pKa = 10.77LYY660 pKa = 9.11TVKK663 pKa = 10.61DD664 pKa = 3.16LHH666 pKa = 6.65FVQNYY671 pKa = 9.27PDD673 pKa = 3.61IDD675 pKa = 3.91YY676 pKa = 11.07EE677 pKa = 4.21PEE679 pKa = 3.81NEE681 pKa = 4.26VNVDD685 pKa = 3.61TEE687 pKa = 4.8DD688 pKa = 3.75VDD690 pKa = 3.98VSNPIADD697 pKa = 3.88DD698 pKa = 3.82VEE700 pKa = 5.29AINPIAEE707 pKa = 4.22DD708 pKa = 3.52VLRR711 pKa = 11.84QNDD714 pKa = 3.46NVTNNVQPALEE725 pKa = 4.23NEE727 pKa = 4.6LVNTATQMEE736 pKa = 4.66VDD738 pKa = 3.87QKK740 pKa = 11.24NPSINVQDD748 pKa = 3.92IDD750 pKa = 4.18SSSTLSDD757 pKa = 3.06EE758 pKa = 4.54SVKK761 pKa = 10.78NDD763 pKa = 3.41YY764 pKa = 9.11STLDD768 pKa = 3.28TNRR771 pKa = 11.84ILDD774 pKa = 4.06YY775 pKa = 10.77INRR778 pKa = 11.84HH779 pKa = 5.78HH780 pKa = 6.86EE781 pKa = 4.28SEE783 pKa = 4.36TSEE786 pKa = 4.28EE787 pKa = 4.46EE788 pKa = 4.14YY789 pKa = 10.48MDD791 pKa = 5.57DD792 pKa = 4.73GDD794 pKa = 4.04ILASLFEE801 pKa = 4.25

Molecular weight: 90.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q0ZNZ6|Q0ZNZ6_9CBAC Uncharacterized protein OS=Neodiprion abietis NPV OX=204507 PE=4 SV=1
MM1 pKa = 7.53LSNRR5 pKa = 11.84ITAEE9 pKa = 3.78TIHH12 pKa = 7.34RR13 pKa = 11.84YY14 pKa = 9.26LCYY17 pKa = 10.45SNNYY21 pKa = 8.69RR22 pKa = 11.84LIVSAVKK29 pKa = 10.12RR30 pKa = 11.84SSEE33 pKa = 3.75ISVSSVTRR41 pKa = 11.84IIYY44 pKa = 8.82AQKK47 pKa = 10.9KK48 pKa = 9.37LVLFALL54 pKa = 4.49

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

93

0

93

24792

51

1136

266.6

30.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.574 ± 0.194

2.686 ± 0.171

6.599 ± 0.212

5.203 ± 0.226

4.852 ± 0.177

2.836 ± 0.173

2.339 ± 0.126

8.704 ± 0.184

7.176 ± 0.301

9.076 ± 0.208

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.424 ± 0.1

8.132 ± 0.208

2.775 ± 0.158

3.562 ± 0.141

4.013 ± 0.194

6.877 ± 0.23

6.954 ± 0.247

6.381 ± 0.203

0.811 ± 0.075

5.026 ± 0.162
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski