Bordetella phage FP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vojvodinavirus; Bordetella virus FP1

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 80 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D0W9P6|A0A2D0W9P6_9CAUD Terminase large subunit OS=Bordetella phage FP1 OX=1916125 PE=4 SV=1
MM1 pKa = 6.96EE2 pKa = 3.81QRR4 pKa = 11.84VYY6 pKa = 10.9RR7 pKa = 11.84DD8 pKa = 3.47SAPIDD13 pKa = 4.17PDD15 pKa = 3.56NLPTPLEE22 pKa = 4.09TLAPGVLSWTDD33 pKa = 3.3EE34 pKa = 4.0NATQGLTYY42 pKa = 10.02YY43 pKa = 9.71YY44 pKa = 10.46AVSALVQGEE53 pKa = 4.35EE54 pKa = 4.39VVSDD58 pKa = 3.66SLEE61 pKa = 4.17VLVEE65 pKa = 4.18PTWPAAPHH73 pKa = 5.07WRR75 pKa = 11.84VNITASHH82 pKa = 6.72ASSGFQFWIAEE93 pKa = 4.12MEE95 pKa = 4.11LRR97 pKa = 11.84EE98 pKa = 4.35TPGGPSVATGGTPSASVQYY117 pKa = 10.73AGNEE121 pKa = 3.61AQYY124 pKa = 11.59AFDD127 pKa = 4.75GNPLTGWSSTSGANPPQWLRR147 pKa = 11.84YY148 pKa = 8.8SLPSGHH154 pKa = 6.85PVAEE158 pKa = 4.38VALQAGDD165 pKa = 3.31TSARR169 pKa = 11.84AGRR172 pKa = 11.84APAALQIQYY181 pKa = 11.22SLDD184 pKa = 3.19GVNWITAKK192 pKa = 10.07TYY194 pKa = 10.26TGIPAWAAGEE204 pKa = 4.08VRR206 pKa = 11.84TFSTLL211 pKa = 3.12

Molecular weight: 22.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D0W9J5|A0A2D0W9J5_9CAUD Uncharacterized protein OS=Bordetella phage FP1 OX=1916125 PE=4 SV=1
MM1 pKa = 7.76RR2 pKa = 11.84ALILILAVLPLLAPQAHH19 pKa = 6.33AEE21 pKa = 4.11EE22 pKa = 4.34VRR24 pKa = 11.84PYY26 pKa = 10.45SAQEE30 pKa = 3.88TIRR33 pKa = 11.84RR34 pKa = 11.84AQVGTHH40 pKa = 5.64SPRR43 pKa = 11.84LAPPVRR49 pKa = 11.84VAPTPARR56 pKa = 11.84AARR59 pKa = 11.84PSRR62 pKa = 11.84YY63 pKa = 10.02DD64 pKa = 3.37RR65 pKa = 11.84MVCRR69 pKa = 11.84VDD71 pKa = 3.25PAKK74 pKa = 10.2PLHH77 pKa = 5.28QQIICEE83 pKa = 4.1KK84 pKa = 10.3QKK86 pKa = 11.27

Molecular weight: 9.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

80

0

80

18739

37

938

234.2

25.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.833 ± 0.413

1.025 ± 0.089

6.1 ± 0.198

7.215 ± 0.209

3.618 ± 0.136

7.994 ± 0.208

1.804 ± 0.15

4.573 ± 0.171

4.317 ± 0.281

8.811 ± 0.229

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.06 ± 0.115

3.511 ± 0.171

5.304 ± 0.22

4.008 ± 0.139

7.044 ± 0.288

4.632 ± 0.241

5.417 ± 0.26

6.937 ± 0.236

2.028 ± 0.117

2.77 ± 0.136
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski