Panagrellus redivivus (Microworm)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Tylenchina; Panagrolaimomorpha; Panagrolaimoidea; Panagrolaimidae; Panagrellus

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26326 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7E4VBK4|A0A7E4VBK4_PANRE Uncharacterized protein OS=Panagrellus redivivus OX=6233 PE=4 SV=1
MM1 pKa = 7.62SNRR4 pKa = 11.84SIKK7 pKa = 9.23TLNEE11 pKa = 3.65AEE13 pKa = 4.62EE14 pKa = 4.17VHH16 pKa = 6.23SLYY19 pKa = 10.91VFQDD23 pKa = 3.05TDD25 pKa = 3.96DD26 pKa = 4.76DD27 pKa = 4.29VASVYY32 pKa = 11.13AFDD35 pKa = 5.09APSKK39 pKa = 10.19ICFKK43 pKa = 10.7GSSSAYY49 pKa = 10.03AFWSTLFFSVWAYY62 pKa = 9.19LQYY65 pKa = 11.06VIAYY69 pKa = 8.87LYY71 pKa = 10.8QIDD74 pKa = 4.14NNSIIAEE81 pKa = 4.37TVNSNLNSEE90 pKa = 4.1VDD92 pKa = 3.35TLKK95 pKa = 11.1ANKK98 pKa = 9.99ADD100 pKa = 4.19DD101 pKa = 4.72DD102 pKa = 4.59SVSVYY107 pKa = 11.07AFDD110 pKa = 5.29NSDD113 pKa = 3.8SPSTDD118 pKa = 2.99ADD120 pKa = 3.8KK121 pKa = 10.5DD122 pKa = 3.72TDD124 pKa = 3.99DD125 pKa = 4.15VEE127 pKa = 4.54SVYY130 pKa = 11.27AFDD133 pKa = 5.37GADD136 pKa = 3.24NDD138 pKa = 4.82EE139 pKa = 4.6IQSSDD144 pKa = 3.51DD145 pKa = 3.62TEE147 pKa = 5.19GSVSSEE153 pKa = 3.84SSNSFGFTIPNLGEE167 pKa = 4.13GEE169 pKa = 4.25QYY171 pKa = 10.97GYY173 pKa = 10.6HH174 pKa = 6.97ADD176 pKa = 3.66SDD178 pKa = 4.09DD179 pKa = 3.84EE180 pKa = 5.95RR181 pKa = 11.84FDD183 pKa = 3.85FYY185 pKa = 11.96NNVTCVRR192 pKa = 11.84LVTGEE197 pKa = 4.24SLTLAFDD204 pKa = 3.89GQNLKK209 pKa = 10.64VVIHH213 pKa = 7.06DD214 pKa = 4.02GKK216 pKa = 10.96AYY218 pKa = 9.7TSFDD222 pKa = 3.49AMPSDD227 pKa = 4.41VADD230 pKa = 4.11LLIAARR236 pKa = 11.84ARR238 pKa = 11.84IIDD241 pKa = 3.76LVFF244 pKa = 4.55

Molecular weight: 26.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7E4VW86|A0A7E4VW86_PANRE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2 OS=Panagrellus redivivus OX=6233 PE=3 SV=1
AA1 pKa = 7.85RR2 pKa = 11.84PLASNQPPARR12 pKa = 11.84QPKK15 pKa = 9.37ARR17 pKa = 11.84HH18 pKa = 5.32QGTVRR23 pKa = 11.84RR24 pKa = 11.84PRR26 pKa = 11.84APLKK30 pKa = 10.56ARR32 pKa = 11.84PLASNQPPARR42 pKa = 11.84QPKK45 pKa = 8.68ARR47 pKa = 11.84HH48 pKa = 5.99RR49 pKa = 11.84GTARR53 pKa = 11.84RR54 pKa = 11.84PKK56 pKa = 10.42APLKK60 pKa = 10.51ARR62 pKa = 11.84PLASNQPPARR72 pKa = 11.84QPKK75 pKa = 9.44ARR77 pKa = 11.84PLATNPPPARR87 pKa = 11.84QPKK90 pKa = 9.41ARR92 pKa = 11.84PLASNQPPARR102 pKa = 11.84QPKK105 pKa = 9.32ARR107 pKa = 11.84HH108 pKa = 5.95RR109 pKa = 11.84DD110 pKa = 3.16SARR113 pKa = 11.84RR114 pKa = 11.84PRR116 pKa = 11.84APLKK120 pKa = 10.56ARR122 pKa = 11.84PLASNQPPAA131 pKa = 4.28

Molecular weight: 14.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26288

38

26326

10071718

11

9598

382.6

42.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.581 ± 0.024

1.958 ± 0.015

5.584 ± 0.015

5.902 ± 0.024

4.453 ± 0.015

5.408 ± 0.02

2.399 ± 0.008

5.494 ± 0.015

5.712 ± 0.022

8.472 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.317 ± 0.008

4.668 ± 0.012

5.827 ± 0.02

3.772 ± 0.016

5.468 ± 0.017

7.734 ± 0.022

6.257 ± 0.021

6.646 ± 0.012

1.02 ± 0.005

3.138 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski