Mucilaginibacter sp. ZH6

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter; unclassified Mucilaginibacter

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4079 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3E2NT28|A0A3E2NT28_9SPHI Efflux transporter outer membrane subunit OS=Mucilaginibacter sp. ZH6 OX=2482727 GN=DYU05_00260 PE=3 SV=1
MM1 pKa = 7.64SEE3 pKa = 4.16ANYY6 pKa = 8.34PTEE9 pKa = 4.87GPDD12 pKa = 3.32GTIPVQDD19 pKa = 3.53GVNWTTNWRR28 pKa = 11.84TYY30 pKa = 11.21LDD32 pKa = 3.38QSDD35 pKa = 3.89NDD37 pKa = 3.25FHH39 pKa = 7.96IQYY42 pKa = 10.31FNIPIVDD49 pKa = 4.44FQNILTFNPGAEE61 pKa = 4.18SVRR64 pKa = 11.84AYY66 pKa = 9.88IGLTDD71 pKa = 3.8ATDD74 pKa = 3.32PMTAKK79 pKa = 10.79LILVPVVDD87 pKa = 3.99GHH89 pKa = 6.38DD90 pKa = 3.99VIVVHH95 pKa = 7.04PDD97 pKa = 2.86LGGGVAGDD105 pKa = 4.08GQSNIYY111 pKa = 11.09DD112 pKa = 3.71MTQACPPNCPANDD125 pKa = 4.0SIMYY129 pKa = 9.86AA130 pKa = 3.5

Molecular weight: 14.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3E2NQG5|A0A3E2NQG5_9SPHI Polymerase OS=Mucilaginibacter sp. ZH6 OX=2482727 GN=DYU05_13945 PE=4 SV=1
MM1 pKa = 7.34KK2 pKa = 10.34RR3 pKa = 11.84ATFDD7 pKa = 3.28STALTRR13 pKa = 11.84LIKK16 pKa = 10.55CCSFFMLMLSATIASAQKK34 pKa = 10.71GKK36 pKa = 8.63VTVVRR41 pKa = 11.84DD42 pKa = 3.68PLFDD46 pKa = 3.39TLLAKK51 pKa = 10.35RR52 pKa = 11.84ALLNRR57 pKa = 11.84KK58 pKa = 8.97GGSSVARR65 pKa = 11.84FTSSYY70 pKa = 10.7GYY72 pKa = 10.67RR73 pKa = 11.84LQIYY77 pKa = 9.56NGSNRR82 pKa = 11.84SAAYY86 pKa = 9.51AAQARR91 pKa = 11.84FNRR94 pKa = 11.84EE95 pKa = 3.55FPEE98 pKa = 3.5MRR100 pKa = 11.84TYY102 pKa = 10.64ISYY105 pKa = 10.54RR106 pKa = 11.84EE107 pKa = 3.95PNFKK111 pKa = 10.14VRR113 pKa = 11.84AGDD116 pKa = 3.29FRR118 pKa = 11.84TRR120 pKa = 11.84LEE122 pKa = 3.88AEE124 pKa = 4.02RR125 pKa = 11.84LKK127 pKa = 11.06SQLGNTFTAMFIVSEE142 pKa = 4.62KK143 pKa = 10.34INPPKK148 pKa = 10.24TVINNDD154 pKa = 2.99

Molecular weight: 17.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4079

0

4079

1373186

18

2339

336.6

37.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.922 ± 0.039

0.782 ± 0.011

5.449 ± 0.026

5.421 ± 0.042

4.808 ± 0.028

6.885 ± 0.036

1.892 ± 0.018

6.953 ± 0.035

6.834 ± 0.036

9.463 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.313 ± 0.019

5.525 ± 0.039

3.912 ± 0.023

3.749 ± 0.028

4.076 ± 0.021

6.146 ± 0.028

5.892 ± 0.037

6.675 ± 0.029

1.168 ± 0.014

4.134 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski