Amino acid dipepetide frequency for Clitocybe odora virus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.286AlaAla: 5.286 ± 0.0
0.881AlaCys: 0.881 ± 0.0
1.762AlaAsp: 1.762 ± 0.0
2.643AlaGlu: 2.643 ± 0.0
3.524AlaPhe: 3.524 ± 0.0
4.405AlaGly: 4.405 ± 0.0
0.881AlaHis: 0.881 ± 0.0
4.405AlaIle: 4.405 ± 0.0
5.286AlaLys: 5.286 ± 0.0
10.573AlaLeu: 10.573 ± 0.0
2.643AlaMet: 2.643 ± 0.0
0.881AlaAsn: 0.881 ± 0.0
2.643AlaPro: 2.643 ± 0.0
0.0AlaGln: 0.0 ± 0.0
1.762AlaArg: 1.762 ± 0.0
5.286AlaSer: 5.286 ± 0.0
2.643AlaThr: 2.643 ± 0.0
1.762AlaVal: 1.762 ± 0.0
3.524AlaTrp: 3.524 ± 0.0
1.762AlaTyr: 1.762 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.881CysAsn: 0.881 ± 0.0
1.762CysPro: 1.762 ± 0.0
1.762CysGln: 1.762 ± 0.0
0.881CysArg: 0.881 ± 0.0
0.881CysSer: 0.881 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.881CysTrp: 0.881 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.762AspAla: 1.762 ± 0.0
0.0AspCys: 0.0 ± 0.0
2.643AspAsp: 2.643 ± 0.0
1.762AspGlu: 1.762 ± 0.0
1.762AspPhe: 1.762 ± 0.0
2.643AspGly: 2.643 ± 0.0
1.762AspHis: 1.762 ± 0.0
4.405AspIle: 4.405 ± 0.0
1.762AspLys: 1.762 ± 0.0
6.167AspLeu: 6.167 ± 0.0
0.0AspMet: 0.0 ± 0.0
0.881AspAsn: 0.881 ± 0.0
3.524AspPro: 3.524 ± 0.0
2.643AspGln: 2.643 ± 0.0
1.762AspArg: 1.762 ± 0.0
0.881AspSer: 0.881 ± 0.0
2.643AspThr: 2.643 ± 0.0
0.881AspVal: 0.881 ± 0.0
1.762AspTrp: 1.762 ± 0.0
0.881AspTyr: 0.881 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
5.286GluAla: 5.286 ± 0.0
0.881GluCys: 0.881 ± 0.0
2.643GluAsp: 2.643 ± 0.0
0.881GluGlu: 0.881 ± 0.0
0.881GluPhe: 0.881 ± 0.0
1.762GluGly: 1.762 ± 0.0
0.0GluHis: 0.0 ± 0.0
0.0GluIle: 0.0 ± 0.0
0.881GluLys: 0.881 ± 0.0
3.524GluLeu: 3.524 ± 0.0
0.0GluMet: 0.0 ± 0.0
0.0GluAsn: 0.0 ± 0.0
2.643GluPro: 2.643 ± 0.0
0.881GluGln: 0.881 ± 0.0
2.643GluArg: 2.643 ± 0.0
5.286GluSer: 5.286 ± 0.0
0.881GluThr: 0.881 ± 0.0
2.643GluVal: 2.643 ± 0.0
0.881GluTrp: 0.881 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.643PheAla: 2.643 ± 0.0
0.881PheCys: 0.881 ± 0.0
3.524PheAsp: 3.524 ± 0.0
0.881PheGlu: 0.881 ± 0.0
2.643PhePhe: 2.643 ± 0.0
5.286PheGly: 5.286 ± 0.0
1.762PheHis: 1.762 ± 0.0
2.643PheIle: 2.643 ± 0.0
5.286PheLys: 5.286 ± 0.0
3.524PheLeu: 3.524 ± 0.0
0.0PheMet: 0.0 ± 0.0
3.524PheAsn: 3.524 ± 0.0
1.762PhePro: 1.762 ± 0.0
0.881PheGln: 0.881 ± 0.0
6.167PheArg: 6.167 ± 0.0
6.167PheSer: 6.167 ± 0.0
2.643PheThr: 2.643 ± 0.0
4.405PheVal: 4.405 ± 0.0
2.643PheTrp: 2.643 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.643GlyAla: 2.643 ± 0.0
0.0GlyCys: 0.0 ± 0.0
2.643GlyAsp: 2.643 ± 0.0
0.881GlyGlu: 0.881 ± 0.0
7.048GlyPhe: 7.048 ± 0.0
1.762GlyGly: 1.762 ± 0.0
2.643GlyHis: 2.643 ± 0.0
5.286GlyIle: 5.286 ± 0.0
5.286GlyLys: 5.286 ± 0.0
7.93GlyLeu: 7.93 ± 0.0
1.762GlyMet: 1.762 ± 0.0
0.881GlyAsn: 0.881 ± 0.0
2.643GlyPro: 2.643 ± 0.0
1.762GlyGln: 1.762 ± 0.0
1.762GlyArg: 1.762 ± 0.0
1.762GlySer: 1.762 ± 0.0
3.524GlyThr: 3.524 ± 0.0
3.524GlyVal: 3.524 ± 0.0
0.0GlyTrp: 0.0 ± 0.0
2.643GlyTyr: 2.643 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.881HisCys: 0.881 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.881HisGlu: 0.881 ± 0.0
0.0HisPhe: 0.0 ± 0.0
0.881HisGly: 0.881 ± 0.0
2.643HisHis: 2.643 ± 0.0
0.881HisIle: 0.881 ± 0.0
0.0HisLys: 0.0 ± 0.0
6.167HisLeu: 6.167 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.881HisAsn: 0.881 ± 0.0
2.643HisPro: 2.643 ± 0.0
0.881HisGln: 0.881 ± 0.0
1.762HisArg: 1.762 ± 0.0
1.762HisSer: 1.762 ± 0.0
1.762HisThr: 1.762 ± 0.0
0.0HisVal: 0.0 ± 0.0
1.762HisTrp: 1.762 ± 0.0
0.881HisTyr: 0.881 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
5.286IleAla: 5.286 ± 0.0
1.762IleCys: 1.762 ± 0.0
0.881IleAsp: 0.881 ± 0.0
2.643IleGlu: 2.643 ± 0.0
2.643IlePhe: 2.643 ± 0.0
5.286IleGly: 5.286 ± 0.0
1.762IleHis: 1.762 ± 0.0
2.643IleIle: 2.643 ± 0.0
2.643IleLys: 2.643 ± 0.0
6.167IleLeu: 6.167 ± 0.0
1.762IleMet: 1.762 ± 0.0
2.643IleAsn: 2.643 ± 0.0
5.286IlePro: 5.286 ± 0.0
3.524IleGln: 3.524 ± 0.0
7.048IleArg: 7.048 ± 0.0
6.167IleSer: 6.167 ± 0.0
5.286IleThr: 5.286 ± 0.0
7.048IleVal: 7.048 ± 0.0
0.881IleTrp: 0.881 ± 0.0
1.762IleTyr: 1.762 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.643LysAla: 2.643 ± 0.0
0.881LysCys: 0.881 ± 0.0
2.643LysAsp: 2.643 ± 0.0
4.405LysGlu: 4.405 ± 0.0
1.762LysPhe: 1.762 ± 0.0
0.0LysGly: 0.0 ± 0.0
0.0LysHis: 0.0 ± 0.0
5.286LysIle: 5.286 ± 0.0
5.286LysLys: 5.286 ± 0.0
4.405LysLeu: 4.405 ± 0.0
1.762LysMet: 1.762 ± 0.0
2.643LysAsn: 2.643 ± 0.0
1.762LysPro: 1.762 ± 0.0
0.881LysGln: 0.881 ± 0.0
0.0LysArg: 0.0 ± 0.0
9.692LysSer: 9.692 ± 0.0
1.762LysThr: 1.762 ± 0.0
6.167LysVal: 6.167 ± 0.0
0.881LysTrp: 0.881 ± 0.0
1.762LysTyr: 1.762 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
7.93LeuAla: 7.93 ± 0.0
0.0LeuCys: 0.0 ± 0.0
3.524LeuAsp: 3.524 ± 0.0
3.524LeuGlu: 3.524 ± 0.0
10.573LeuPhe: 10.573 ± 0.0
6.167LeuGly: 6.167 ± 0.0
3.524LeuHis: 3.524 ± 0.0
12.335LeuIle: 12.335 ± 0.0
6.167LeuLys: 6.167 ± 0.0
14.978LeuLeu: 14.978 ± 0.0
0.0LeuMet: 0.0 ± 0.0
2.643LeuAsn: 2.643 ± 0.0
6.167LeuPro: 6.167 ± 0.0
1.762LeuGln: 1.762 ± 0.0
5.286LeuArg: 5.286 ± 0.0
11.454LeuSer: 11.454 ± 0.0
7.93LeuThr: 7.93 ± 0.0
8.811LeuVal: 8.811 ± 0.0
2.643LeuTrp: 2.643 ± 0.0
3.524LeuTyr: 3.524 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.762MetAla: 1.762 ± 0.0
0.0MetCys: 0.0 ± 0.0
1.762MetAsp: 1.762 ± 0.0
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
1.762MetGly: 1.762 ± 0.0
0.0MetHis: 0.0 ± 0.0
4.405MetIle: 4.405 ± 0.0
1.762MetLys: 1.762 ± 0.0
0.881MetLeu: 0.881 ± 0.0
0.881MetMet: 0.881 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.0MetPro: 0.0 ± 0.0
1.762MetGln: 1.762 ± 0.0
4.405MetArg: 4.405 ± 0.0
0.881MetSer: 0.881 ± 0.0
0.881MetThr: 0.881 ± 0.0
5.286MetVal: 5.286 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.881MetTyr: 0.881 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.524AsnAla: 3.524 ± 0.0
0.0AsnCys: 0.0 ± 0.0
0.881AsnAsp: 0.881 ± 0.0
0.0AsnGlu: 0.0 ± 0.0
0.881AsnPhe: 0.881 ± 0.0
0.881AsnGly: 0.881 ± 0.0
0.881AsnHis: 0.881 ± 0.0
1.762AsnIle: 1.762 ± 0.0
1.762AsnLys: 1.762 ± 0.0
1.762AsnLeu: 1.762 ± 0.0
0.881AsnMet: 0.881 ± 0.0
0.881AsnAsn: 0.881 ± 0.0
0.0AsnPro: 0.0 ± 0.0
2.643AsnGln: 2.643 ± 0.0
0.881AsnArg: 0.881 ± 0.0
1.762AsnSer: 1.762 ± 0.0
4.405AsnThr: 4.405 ± 0.0
1.762AsnVal: 1.762 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
0.881AsnTyr: 0.881 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
4.405ProAla: 4.405 ± 0.0
0.0ProCys: 0.0 ± 0.0
0.881ProAsp: 0.881 ± 0.0
3.524ProGlu: 3.524 ± 0.0
3.524ProPhe: 3.524 ± 0.0
2.643ProGly: 2.643 ± 0.0
0.0ProHis: 0.0 ± 0.0
2.643ProIle: 2.643 ± 0.0
2.643ProLys: 2.643 ± 0.0
8.811ProLeu: 8.811 ± 0.0
2.643ProMet: 2.643 ± 0.0
0.881ProAsn: 0.881 ± 0.0
1.762ProPro: 1.762 ± 0.0
0.881ProGln: 0.881 ± 0.0
3.524ProArg: 3.524 ± 0.0
5.286ProSer: 5.286 ± 0.0
4.405ProThr: 4.405 ± 0.0
4.405ProVal: 4.405 ± 0.0
1.762ProTrp: 1.762 ± 0.0
2.643ProTyr: 2.643 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
0.881GlnAla: 0.881 ± 0.0
0.0GlnCys: 0.0 ± 0.0
1.762GlnAsp: 1.762 ± 0.0
0.881GlnGlu: 0.881 ± 0.0
1.762GlnPhe: 1.762 ± 0.0
3.524GlnGly: 3.524 ± 0.0
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
0.881GlnLys: 0.881 ± 0.0
2.643GlnLeu: 2.643 ± 0.0
3.524GlnMet: 3.524 ± 0.0
1.762GlnAsn: 1.762 ± 0.0
1.762GlnPro: 1.762 ± 0.0
1.762GlnGln: 1.762 ± 0.0
0.0GlnArg: 0.0 ± 0.0
0.881GlnSer: 0.881 ± 0.0
1.762GlnThr: 1.762 ± 0.0
5.286GlnVal: 5.286 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
3.524GlnTyr: 3.524 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
4.405ArgAla: 4.405 ± 0.0
0.0ArgCys: 0.0 ± 0.0
0.0ArgAsp: 0.0 ± 0.0
0.0ArgGlu: 0.0 ± 0.0
2.643ArgPhe: 2.643 ± 0.0
3.524ArgGly: 3.524 ± 0.0
0.0ArgHis: 0.0 ± 0.0
7.048ArgIle: 7.048 ± 0.0
1.762ArgLys: 1.762 ± 0.0
6.167ArgLeu: 6.167 ± 0.0
1.762ArgMet: 1.762 ± 0.0
0.881ArgAsn: 0.881 ± 0.0
2.643ArgPro: 2.643 ± 0.0
1.762ArgGln: 1.762 ± 0.0
2.643ArgArg: 2.643 ± 0.0
5.286ArgSer: 5.286 ± 0.0
3.524ArgThr: 3.524 ± 0.0
7.048ArgVal: 7.048 ± 0.0
0.881ArgTrp: 0.881 ± 0.0
1.762ArgTyr: 1.762 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.405SerAla: 4.405 ± 0.0
0.0SerCys: 0.0 ± 0.0
1.762SerAsp: 1.762 ± 0.0
0.881SerGlu: 0.881 ± 0.0
6.167SerPhe: 6.167 ± 0.0
5.286SerGly: 5.286 ± 0.0
4.405SerHis: 4.405 ± 0.0
5.286SerIle: 5.286 ± 0.0
0.881SerLys: 0.881 ± 0.0
14.978SerLeu: 14.978 ± 0.0
3.524SerMet: 3.524 ± 0.0
1.762SerAsn: 1.762 ± 0.0
5.286SerPro: 5.286 ± 0.0
4.405SerGln: 4.405 ± 0.0
4.405SerArg: 4.405 ± 0.0
5.286SerSer: 5.286 ± 0.0
4.405SerThr: 4.405 ± 0.0
6.167SerVal: 6.167 ± 0.0
1.762SerTrp: 1.762 ± 0.0
4.405SerTyr: 4.405 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.762ThrAla: 1.762 ± 0.0
0.0ThrCys: 0.0 ± 0.0
3.524ThrAsp: 3.524 ± 0.0
3.524ThrGlu: 3.524 ± 0.0
3.524ThrPhe: 3.524 ± 0.0
2.643ThrGly: 2.643 ± 0.0
1.762ThrHis: 1.762 ± 0.0
5.286ThrIle: 5.286 ± 0.0
3.524ThrLys: 3.524 ± 0.0
7.048ThrLeu: 7.048 ± 0.0
1.762ThrMet: 1.762 ± 0.0
2.643ThrAsn: 2.643 ± 0.0
6.167ThrPro: 6.167 ± 0.0
1.762ThrGln: 1.762 ± 0.0
0.881ThrArg: 0.881 ± 0.0
2.643ThrSer: 2.643 ± 0.0
1.762ThrThr: 1.762 ± 0.0
2.643ThrVal: 2.643 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
1.762ThrTyr: 1.762 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.405ValAla: 4.405 ± 0.0
0.0ValCys: 0.0 ± 0.0
5.286ValAsp: 5.286 ± 0.0
4.405ValGlu: 4.405 ± 0.0
5.286ValPhe: 5.286 ± 0.0
4.405ValGly: 4.405 ± 0.0
0.881ValHis: 0.881 ± 0.0
5.286ValIle: 5.286 ± 0.0
7.048ValLys: 7.048 ± 0.0
7.048ValLeu: 7.048 ± 0.0
2.643ValMet: 2.643 ± 0.0
0.0ValAsn: 0.0 ± 0.0
7.048ValPro: 7.048 ± 0.0
0.881ValGln: 0.881 ± 0.0
4.405ValArg: 4.405 ± 0.0
7.93ValSer: 7.93 ± 0.0
2.643ValThr: 2.643 ± 0.0
4.405ValVal: 4.405 ± 0.0
0.0ValTrp: 0.0 ± 0.0
1.762ValTyr: 1.762 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.762TrpAla: 1.762 ± 0.0
0.0TrpCys: 0.0 ± 0.0
2.643TrpAsp: 2.643 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.881TrpPhe: 0.881 ± 0.0
1.762TrpGly: 1.762 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.762TrpIle: 1.762 ± 0.0
0.881TrpLys: 0.881 ± 0.0
3.524TrpLeu: 3.524 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.762TrpAsn: 1.762 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.881TrpGln: 0.881 ± 0.0
2.643TrpArg: 2.643 ± 0.0
1.762TrpSer: 1.762 ± 0.0
0.881TrpThr: 0.881 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.881TrpTyr: 0.881 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.762TyrAla: 1.762 ± 0.0
0.881TyrCys: 0.881 ± 0.0
1.762TyrAsp: 1.762 ± 0.0
0.881TyrGlu: 0.881 ± 0.0
1.762TyrPhe: 1.762 ± 0.0
2.643TyrGly: 2.643 ± 0.0
1.762TyrHis: 1.762 ± 0.0
1.762TyrIle: 1.762 ± 0.0
0.881TyrLys: 0.881 ± 0.0
2.643TyrLeu: 2.643 ± 0.0
0.881TyrMet: 0.881 ± 0.0
0.0TyrAsn: 0.0 ± 0.0
1.762TyrPro: 1.762 ± 0.0
0.881TyrGln: 0.881 ± 0.0
0.881TyrArg: 0.881 ± 0.0
4.405TyrSer: 4.405 ± 0.0
0.881TyrThr: 0.881 ± 0.0
3.524TyrVal: 3.524 ± 0.0
1.762TyrTrp: 1.762 ± 0.0
5.286TyrTyr: 5.286 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (1136 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski