Saccharomycodes ludwigii

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4013 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A376B2H4|A0A376B2H4_9ASCO Related to mitochondrial ferredoxin OS=Saccharomycodes ludwigii OX=36035 GN=SCODWIG_00612 PE=4 SV=1
MM1 pKa = 7.03IHH3 pKa = 6.94AVLICKK9 pKa = 9.88LMKK12 pKa = 10.19FYY14 pKa = 11.11TPVDD18 pKa = 3.7VNKK21 pKa = 10.08QQILFQQVYY30 pKa = 10.71DD31 pKa = 4.85LINNRR36 pKa = 11.84ISEE39 pKa = 4.34EE40 pKa = 3.86QSSFLVTPPSILLKK54 pKa = 11.04DD55 pKa = 3.8NGASAEE61 pKa = 4.05PDD63 pKa = 3.26GTDD66 pKa = 3.0IQIIYY71 pKa = 10.69KK72 pKa = 10.32NFATLYY78 pKa = 10.13FVFIVDD84 pKa = 3.86DD85 pKa = 4.03QEE87 pKa = 5.15SEE89 pKa = 4.33LAILDD94 pKa = 4.88LIQTFVEE101 pKa = 4.2CLDD104 pKa = 3.31MCFANVCEE112 pKa = 4.36LDD114 pKa = 5.56LVFGWQTLQSVLEE127 pKa = 4.08EE128 pKa = 4.08MVQGGMVIEE137 pKa = 4.07TDD139 pKa = 2.85KK140 pKa = 11.8YY141 pKa = 10.58EE142 pKa = 3.98IVKK145 pKa = 10.83AIDD148 pKa = 4.24LLNMANGNGNMGGPAGSNANTDD170 pKa = 2.99GSYY173 pKa = 9.56LTGSLANAFSMFTTGGFSTWGAGSS197 pKa = 3.28

Molecular weight: 21.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A376B7W3|A0A376B7W3_9ASCO Protoporphyrinogen oxidase OS=Saccharomycodes ludwigii OX=36035 GN=SCODWIG_02355 PE=3 SV=1
MM1 pKa = 7.39ARR3 pKa = 11.84YY4 pKa = 8.47GATSTNPAKK13 pKa = 10.42SASARR18 pKa = 11.84GSYY21 pKa = 10.51LRR23 pKa = 11.84VSFKK27 pKa = 9.46NTRR30 pKa = 11.84EE31 pKa = 3.71TAQAISGWEE40 pKa = 3.8LKK42 pKa = 10.15KK43 pKa = 10.89AQTYY47 pKa = 10.12LEE49 pKa = 4.12QVLDD53 pKa = 3.83HH54 pKa = 6.22QRR56 pKa = 11.84AIPFRR61 pKa = 11.84RR62 pKa = 11.84FNSSIGRR69 pKa = 11.84TAQGKK74 pKa = 8.99EE75 pKa = 3.74FGVTKK80 pKa = 10.55ARR82 pKa = 11.84WPAKK86 pKa = 9.04SVKK89 pKa = 9.44FVQGLLQNAAANAEE103 pKa = 4.33VCFF106 pKa = 4.35

Molecular weight: 11.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4013

0

4013

2302366

35

4839

573.7

65.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.706 ± 0.031

1.315 ± 0.014

6.011 ± 0.027

6.271 ± 0.041

4.436 ± 0.026

4.855 ± 0.033

1.983 ± 0.012

7.258 ± 0.03

7.978 ± 0.04

9.389 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.826 ± 0.012

8.191 ± 0.051

3.811 ± 0.022

3.571 ± 0.026

3.612 ± 0.021

8.608 ± 0.046

6.236 ± 0.029

5.328 ± 0.021

0.921 ± 0.01

3.694 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski