Marinomonas phage P12026

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 54 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6S2Z9|I6S2Z9_9CAUD Uncharacterized protein OS=Marinomonas phage P12026 OX=1176423 GN=P12026_51 PE=4 SV=1
MM1 pKa = 7.54INIATLRR8 pKa = 11.84KK9 pKa = 9.33LVNLRR14 pKa = 11.84RR15 pKa = 11.84KK16 pKa = 9.84ADD18 pKa = 3.65RR19 pKa = 11.84FTDD22 pKa = 3.85SLPMSINAAFFDD34 pKa = 3.84NDD36 pKa = 3.75LATSYY41 pKa = 11.39YY42 pKa = 11.45AMVDD46 pKa = 3.46LLIDD50 pKa = 4.06EE51 pKa = 5.21LCVGCQADD59 pKa = 3.9YY60 pKa = 11.46VDD62 pKa = 3.53WVLNEE67 pKa = 3.57WHH69 pKa = 6.76PTDD72 pKa = 4.62NIMIVDD78 pKa = 3.99GVEE81 pKa = 4.47FNFKK85 pKa = 9.96TEE87 pKa = 3.99EE88 pKa = 3.71EE89 pKa = 4.85LYY91 pKa = 10.54AHH93 pKa = 6.57LVEE96 pKa = 4.37YY97 pKa = 10.33EE98 pKa = 4.12GWSS101 pKa = 3.34

Molecular weight: 11.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6R1J7|I6R1J7_9CAUD Phage exonuclease OS=Marinomonas phage P12026 OX=1176423 GN=P12026_50 PE=4 SV=1
MM1 pKa = 6.86THH3 pKa = 6.41NKK5 pKa = 9.99FEE7 pKa = 4.54DD8 pKa = 3.2RR9 pKa = 11.84RR10 pKa = 11.84VNYY13 pKa = 10.29GSATVPWSDD22 pKa = 4.75KK23 pKa = 10.23NNAWRR28 pKa = 11.84LPCGKK33 pKa = 8.6FTKK36 pKa = 10.27DD37 pKa = 2.85RR38 pKa = 11.84NEE40 pKa = 4.23ALNTAKK46 pKa = 10.6RR47 pKa = 11.84INRR50 pKa = 11.84FFTGRR55 pKa = 11.84VKK57 pKa = 11.16NEE59 pKa = 3.72GAVV62 pKa = 3.16

Molecular weight: 7.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

54

0

54

9918

44

639

183.7

20.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.962 ± 0.735

1.018 ± 0.147

6.12 ± 0.332

6.927 ± 0.373

3.105 ± 0.19

6.765 ± 0.341

1.754 ± 0.208

6.211 ± 0.24

6.655 ± 0.482

7.743 ± 0.269

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.833 ± 0.189

4.477 ± 0.319

3.559 ± 0.261

3.862 ± 0.327

4.991 ± 0.298

7.209 ± 0.4

5.888 ± 0.362

6.322 ± 0.241

1.603 ± 0.151

2.995 ± 0.218
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski