Deinbollia mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A142C6K7|A0A142C6K7_9GEMI Capsid protein OS=Deinbollia mosaic virus OX=1812308 GN=AV1 PE=3 SV=1
MM1 pKa = 7.99WDD3 pKa = 3.38PLVNEE8 pKa = 5.24FPDD11 pKa = 3.72SVHH14 pKa = 6.81GFRR17 pKa = 11.84CMLAIKK23 pKa = 9.31YY24 pKa = 8.48LQAIEE29 pKa = 4.11EE30 pKa = 4.56TYY32 pKa = 10.77EE33 pKa = 4.16PNTLGHH39 pKa = 6.99DD40 pKa = 5.01LIRR43 pKa = 11.84DD44 pKa = 4.58LISVIRR50 pKa = 11.84ARR52 pKa = 11.84DD53 pKa = 3.49YY54 pKa = 11.1VEE56 pKa = 3.35ATRR59 pKa = 11.84RR60 pKa = 11.84YY61 pKa = 8.32NHH63 pKa = 5.68FHH65 pKa = 6.31SRR67 pKa = 11.84LEE69 pKa = 4.38GASKK73 pKa = 9.9TEE75 pKa = 3.89LRR77 pKa = 11.84QPICQPCCCPYY88 pKa = 10.45CPRR91 pKa = 11.84HH92 pKa = 5.76KK93 pKa = 9.6QTSSMDD99 pKa = 3.66LQAHH103 pKa = 4.65VQKK106 pKa = 10.96AQDD109 pKa = 3.55VQNVQKK115 pKa = 10.64PP116 pKa = 3.36

Molecular weight: 13.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A142C6K8|A0A142C6K8_9GEMI AC4 OS=Deinbollia mosaic virus OX=1812308 GN=AC4 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.44RR4 pKa = 11.84PGDD7 pKa = 3.89IIISTPASKK16 pKa = 10.34VRR18 pKa = 11.84RR19 pKa = 11.84KK20 pKa = 10.58LNFDD24 pKa = 3.17SPYY27 pKa = 9.22ASRR30 pKa = 11.84VAVPIVQGTNRR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84AWTYY47 pKa = 9.4RR48 pKa = 11.84PMYY51 pKa = 9.33RR52 pKa = 11.84KK53 pKa = 9.49PKK55 pKa = 7.48MYY57 pKa = 10.84RR58 pKa = 11.84MFRR61 pKa = 11.84SLDD64 pKa = 3.4VPRR67 pKa = 11.84GCEE70 pKa = 4.36GPCKK74 pKa = 9.32VQSYY78 pKa = 6.99EE79 pKa = 3.67QRR81 pKa = 11.84DD82 pKa = 4.05DD83 pKa = 3.72VKK85 pKa = 9.5HH86 pKa = 5.48TGIVRR91 pKa = 11.84CVSDD95 pKa = 3.36VTRR98 pKa = 11.84GPGITHH104 pKa = 6.76RR105 pKa = 11.84VGKK108 pKa = 9.5RR109 pKa = 11.84FCVKK113 pKa = 10.3SIYY116 pKa = 10.16ILGKK120 pKa = 9.79VWMDD124 pKa = 4.63DD125 pKa = 3.63NIKK128 pKa = 10.13KK129 pKa = 9.97QNHH132 pKa = 4.98TNQVMFFLVRR142 pKa = 11.84DD143 pKa = 3.69RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 8.77GTSPQDD153 pKa = 3.2FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.11PSTATVKK171 pKa = 10.81NDD173 pKa = 2.84LRR175 pKa = 11.84DD176 pKa = 3.47RR177 pKa = 11.84YY178 pKa = 9.28QVLRR182 pKa = 11.84KK183 pKa = 8.77FHH185 pKa = 5.93ATVVGGPSGMKK196 pKa = 9.33EE197 pKa = 3.56QSLVKK202 pKa = 10.4RR203 pKa = 11.84FFRR206 pKa = 11.84VNSHH210 pKa = 4.87VVYY213 pKa = 10.59NHH215 pKa = 5.69QEE217 pKa = 3.45AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 9.86ATLKK247 pKa = 9.47IRR249 pKa = 11.84IYY251 pKa = 10.65FYY253 pKa = 11.26DD254 pKa = 3.34AVTNN258 pKa = 4.16

Molecular weight: 29.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1633

79

364

204.1

23.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.021 ± 0.589

2.082 ± 0.408

4.96 ± 0.237

4.409 ± 0.558

4.348 ± 0.317

4.838 ± 0.341

3.307 ± 0.464

6.43 ± 0.542

5.818 ± 0.539

6.981 ± 0.479

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.837 ± 0.419

6.369 ± 0.547

5.695 ± 0.441

5.45 ± 0.831

7.287 ± 0.694

8.634 ± 0.742

5.94 ± 0.49

5.205 ± 0.938

1.408 ± 0.189

3.98 ± 0.486
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski