Myroides profundi

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3534 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B5RHP8|A0A0B5RHP8_9FLAO Peptidase S9 OS=Myroides profundi OX=480520 GN=MPR_1081 PE=4 SV=1
MM1 pKa = 7.69KK2 pKa = 10.74LNTTNRR8 pKa = 11.84ADD10 pKa = 3.82LPNPKK15 pKa = 9.12ILKK18 pKa = 8.47EE19 pKa = 4.04LCKK22 pKa = 10.74SLATLDD28 pKa = 5.69AILCQDD34 pKa = 3.0WEE36 pKa = 4.24YY37 pKa = 11.07RR38 pKa = 11.84YY39 pKa = 10.92YY40 pKa = 10.99LYY42 pKa = 11.38NHH44 pKa = 7.2LWSDD48 pKa = 3.84DD49 pKa = 3.58EE50 pKa = 5.68EE51 pKa = 4.48FFQMRR56 pKa = 11.84DD57 pKa = 3.23GEE59 pKa = 4.5GNDD62 pKa = 3.25MVILFRR68 pKa = 11.84VDD70 pKa = 2.96GTVINGFDD78 pKa = 3.25HH79 pKa = 6.74EE80 pKa = 5.18LYY82 pKa = 10.74DD83 pKa = 5.13FEE85 pKa = 5.85EE86 pKa = 4.2NLPNKK91 pKa = 10.0EE92 pKa = 4.46DD93 pKa = 3.66LTAGLPNQYY102 pKa = 9.92IEE104 pKa = 5.23FIFGEE109 pKa = 4.64YY110 pKa = 9.83ISDD113 pKa = 3.62IGTTYY118 pKa = 10.64CIWSDD123 pKa = 4.63NNQQWAIGQVDD134 pKa = 3.69NEE136 pKa = 4.46EE137 pKa = 5.0DD138 pKa = 3.82GSDD141 pKa = 3.45DD142 pKa = 3.91QLYY145 pKa = 10.47IFDD148 pKa = 5.15NNPDD152 pKa = 3.65TYY154 pKa = 11.22INWATNYY161 pKa = 10.15YY162 pKa = 9.99FDD164 pKa = 4.68EE165 pKa = 4.83EE166 pKa = 4.67EE167 pKa = 4.26EE168 pKa = 4.95SMTADD173 pKa = 3.0KK174 pKa = 11.0KK175 pKa = 11.16DD176 pKa = 3.83IIRR179 pKa = 11.84QIYY182 pKa = 8.22QGKK185 pKa = 7.27TLTKK189 pKa = 10.79EE190 pKa = 4.19MILTLNPEE198 pKa = 4.18LEE200 pKa = 4.1DD201 pKa = 3.64WEE203 pKa = 4.53LLKK206 pKa = 10.94EE207 pKa = 4.59DD208 pKa = 4.59IIEE211 pKa = 3.98INYY214 pKa = 8.21PHH216 pKa = 6.86SLL218 pKa = 3.5

Molecular weight: 25.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B5RWD5|A0A0B5RWD5_9FLAO Mechanosensitive ion channel protein MscS OS=Myroides profundi OX=480520 GN=MPR_1159 PE=4 SV=1
MM1 pKa = 8.03IEE3 pKa = 4.28DD4 pKa = 4.01VIYY7 pKa = 9.97NQWSIILGLLYY18 pKa = 10.3TGWLTSRR25 pKa = 11.84IVKK28 pKa = 8.88RR29 pKa = 11.84TTKK32 pKa = 9.96GRR34 pKa = 11.84KK35 pKa = 8.21EE36 pKa = 3.56RR37 pKa = 11.84AGCVDD42 pKa = 4.06VIRR45 pKa = 11.84VFLIIGGLFGLTVFGSVAFGSMFIRR70 pKa = 11.84TLSSLINGTVVFSIEE85 pKa = 3.87LFAEE89 pKa = 4.69LVCYY93 pKa = 9.18GTMVAVLVFAFIGVMLYY110 pKa = 10.84GVGRR114 pKa = 11.84DD115 pKa = 3.14MRR117 pKa = 11.84RR118 pKa = 11.84YY119 pKa = 9.54NRR121 pKa = 11.84LARR124 pKa = 11.84LLGLGVLVPLIMLVFEE140 pKa = 4.65GALVYY145 pKa = 10.96ALVRR149 pKa = 11.84NIHH152 pKa = 6.4NIPLSVLLTVFILILLIGIILYY174 pKa = 9.86VKK176 pKa = 10.17IIRR179 pKa = 11.84EE180 pKa = 4.27EE181 pKa = 3.77ITDD184 pKa = 4.79LIEE187 pKa = 4.18KK188 pKa = 9.12EE189 pKa = 4.37KK190 pKa = 10.8NASRR194 pKa = 11.84SKK196 pKa = 10.02EE197 pKa = 3.93NKK199 pKa = 8.75TKK201 pKa = 11.03GITQDD206 pKa = 3.11KK207 pKa = 10.36SVTRR211 pKa = 11.84AQTANHH217 pKa = 5.98SRR219 pKa = 11.84QEE221 pKa = 4.5SNRR224 pKa = 11.84STQRR228 pKa = 11.84TNKK231 pKa = 9.37PNPHH235 pKa = 5.36NDD237 pKa = 2.57EE238 pKa = 3.72WKK240 pKa = 9.99RR241 pKa = 11.84RR242 pKa = 11.84SNRR245 pKa = 11.84RR246 pKa = 11.84KK247 pKa = 9.98KK248 pKa = 10.38RR249 pKa = 3.33

Molecular weight: 28.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3534

0

3534

1144917

37

3339

324.0

36.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.181 ± 0.049

0.727 ± 0.013

5.552 ± 0.032

6.822 ± 0.048

4.913 ± 0.033

6.246 ± 0.046

1.755 ± 0.021

7.968 ± 0.038

7.839 ± 0.04

9.449 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.338 ± 0.025

5.783 ± 0.043

3.125 ± 0.022

3.542 ± 0.025

3.39 ± 0.03

6.343 ± 0.035

5.798 ± 0.044

6.702 ± 0.038

0.975 ± 0.014

4.552 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski