Amino acid dipepetide frequency for Hubei myriapoda virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.303AlaAla: 3.303 ± 0.0
1.982AlaCys: 1.982 ± 0.0
4.293AlaAsp: 4.293 ± 0.0
2.642AlaGlu: 2.642 ± 0.0
1.982AlaPhe: 1.982 ± 0.0
2.312AlaGly: 2.312 ± 0.0
1.982AlaHis: 1.982 ± 0.0
2.642AlaIle: 2.642 ± 0.0
3.633AlaLys: 3.633 ± 0.0
4.954AlaLeu: 4.954 ± 0.0
1.321AlaMet: 1.321 ± 0.0
3.633AlaAsn: 3.633 ± 0.0
3.633AlaPro: 3.633 ± 0.0
1.651AlaGln: 1.651 ± 0.0
3.963AlaArg: 3.963 ± 0.0
5.945AlaSer: 5.945 ± 0.0
5.284AlaThr: 5.284 ± 0.0
3.963AlaVal: 3.963 ± 0.0
1.321AlaTrp: 1.321 ± 0.0
2.972AlaTyr: 2.972 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.33CysAla: 0.33 ± 0.0
0.991CysCys: 0.991 ± 0.0
0.661CysAsp: 0.661 ± 0.0
1.651CysGlu: 1.651 ± 0.0
0.991CysPhe: 0.991 ± 0.0
0.991CysGly: 0.991 ± 0.0
0.661CysHis: 0.661 ± 0.0
0.33CysIle: 0.33 ± 0.0
1.321CysLys: 1.321 ± 0.0
1.982CysLeu: 1.982 ± 0.0
0.33CysMet: 0.33 ± 0.0
0.661CysAsn: 0.661 ± 0.0
0.991CysPro: 0.991 ± 0.0
0.33CysGln: 0.33 ± 0.0
1.982CysArg: 1.982 ± 0.0
0.991CysSer: 0.991 ± 0.0
1.321CysThr: 1.321 ± 0.0
1.651CysVal: 1.651 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.33CysTyr: 0.33 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.642AspAla: 2.642 ± 0.0
0.991AspCys: 0.991 ± 0.0
3.303AspAsp: 3.303 ± 0.0
1.982AspGlu: 1.982 ± 0.0
2.312AspPhe: 2.312 ± 0.0
0.991AspGly: 0.991 ± 0.0
1.982AspHis: 1.982 ± 0.0
4.954AspIle: 4.954 ± 0.0
4.293AspLys: 4.293 ± 0.0
3.963AspLeu: 3.963 ± 0.0
0.991AspMet: 0.991 ± 0.0
3.963AspAsn: 3.963 ± 0.0
3.963AspPro: 3.963 ± 0.0
1.321AspGln: 1.321 ± 0.0
1.321AspArg: 1.321 ± 0.0
3.303AspSer: 3.303 ± 0.0
2.642AspThr: 2.642 ± 0.0
5.614AspVal: 5.614 ± 0.0
0.33AspTrp: 0.33 ± 0.0
1.651AspTyr: 1.651 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.982GluAla: 1.982 ± 0.0
0.33GluCys: 0.33 ± 0.0
1.651GluAsp: 1.651 ± 0.0
4.624GluGlu: 4.624 ± 0.0
5.284GluPhe: 5.284 ± 0.0
4.954GluGly: 4.954 ± 0.0
1.321GluHis: 1.321 ± 0.0
4.293GluIle: 4.293 ± 0.0
5.284GluLys: 5.284 ± 0.0
4.293GluLeu: 4.293 ± 0.0
0.991GluMet: 0.991 ± 0.0
3.303GluAsn: 3.303 ± 0.0
1.651GluPro: 1.651 ± 0.0
4.624GluGln: 4.624 ± 0.0
0.991GluArg: 0.991 ± 0.0
3.303GluSer: 3.303 ± 0.0
2.642GluThr: 2.642 ± 0.0
3.963GluVal: 3.963 ± 0.0
0.661GluTrp: 0.661 ± 0.0
2.312GluTyr: 2.312 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
4.624PheAla: 4.624 ± 0.0
0.991PheCys: 0.991 ± 0.0
2.642PheAsp: 2.642 ± 0.0
5.614PheGlu: 5.614 ± 0.0
2.972PhePhe: 2.972 ± 0.0
0.991PheGly: 0.991 ± 0.0
0.661PheHis: 0.661 ± 0.0
1.982PheIle: 1.982 ± 0.0
4.954PheLys: 4.954 ± 0.0
3.633PheLeu: 3.633 ± 0.0
0.661PheMet: 0.661 ± 0.0
4.293PheAsn: 4.293 ± 0.0
0.991PhePro: 0.991 ± 0.0
1.651PheGln: 1.651 ± 0.0
2.972PheArg: 2.972 ± 0.0
3.633PheSer: 3.633 ± 0.0
3.963PheThr: 3.963 ± 0.0
4.624PheVal: 4.624 ± 0.0
0.33PheTrp: 0.33 ± 0.0
4.293PheTyr: 4.293 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.963GlyAla: 3.963 ± 0.0
0.661GlyCys: 0.661 ± 0.0
2.642GlyAsp: 2.642 ± 0.0
3.633GlyGlu: 3.633 ± 0.0
1.982GlyPhe: 1.982 ± 0.0
1.651GlyGly: 1.651 ± 0.0
0.661GlyHis: 0.661 ± 0.0
1.651GlyIle: 1.651 ± 0.0
3.303GlyLys: 3.303 ± 0.0
2.312GlyLeu: 2.312 ± 0.0
2.312GlyMet: 2.312 ± 0.0
3.303GlyAsn: 3.303 ± 0.0
1.651GlyPro: 1.651 ± 0.0
1.651GlyGln: 1.651 ± 0.0
1.982GlyArg: 1.982 ± 0.0
3.633GlySer: 3.633 ± 0.0
3.303GlyThr: 3.303 ± 0.0
3.633GlyVal: 3.633 ± 0.0
0.661GlyTrp: 0.661 ± 0.0
1.321GlyTyr: 1.321 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.33HisAla: 0.33 ± 0.0
0.661HisCys: 0.661 ± 0.0
1.321HisAsp: 1.321 ± 0.0
1.321HisGlu: 1.321 ± 0.0
1.651HisPhe: 1.651 ± 0.0
0.991HisGly: 0.991 ± 0.0
0.661HisHis: 0.661 ± 0.0
0.661HisIle: 0.661 ± 0.0
0.33HisLys: 0.33 ± 0.0
1.982HisLeu: 1.982 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.991HisAsn: 0.991 ± 0.0
1.982HisPro: 1.982 ± 0.0
0.661HisGln: 0.661 ± 0.0
0.661HisArg: 0.661 ± 0.0
1.982HisSer: 1.982 ± 0.0
0.991HisThr: 0.991 ± 0.0
0.991HisVal: 0.991 ± 0.0
0.33HisTrp: 0.33 ± 0.0
0.991HisTyr: 0.991 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.972IleAla: 2.972 ± 0.0
0.661IleCys: 0.661 ± 0.0
2.972IleAsp: 2.972 ± 0.0
4.293IleGlu: 4.293 ± 0.0
3.303IlePhe: 3.303 ± 0.0
3.963IleGly: 3.963 ± 0.0
0.661IleHis: 0.661 ± 0.0
2.972IleIle: 2.972 ± 0.0
2.972IleLys: 2.972 ± 0.0
6.605IleLeu: 6.605 ± 0.0
0.661IleMet: 0.661 ± 0.0
4.293IleAsn: 4.293 ± 0.0
5.614IlePro: 5.614 ± 0.0
2.312IleGln: 2.312 ± 0.0
2.312IleArg: 2.312 ± 0.0
4.624IleSer: 4.624 ± 0.0
2.972IleThr: 2.972 ± 0.0
5.284IleVal: 5.284 ± 0.0
0.661IleTrp: 0.661 ± 0.0
1.651IleTyr: 1.651 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
0.991LysAla: 0.991 ± 0.0
1.651LysCys: 1.651 ± 0.0
3.633LysAsp: 3.633 ± 0.0
3.303LysGlu: 3.303 ± 0.0
4.293LysPhe: 4.293 ± 0.0
1.982LysGly: 1.982 ± 0.0
3.633LysHis: 3.633 ± 0.0
6.275LysIle: 6.275 ± 0.0
2.642LysLys: 2.642 ± 0.0
6.605LysLeu: 6.605 ± 0.0
0.33LysMet: 0.33 ± 0.0
1.321LysAsn: 1.321 ± 0.0
0.991LysPro: 0.991 ± 0.0
4.293LysGln: 4.293 ± 0.0
1.651LysArg: 1.651 ± 0.0
7.266LysSer: 7.266 ± 0.0
4.624LysThr: 4.624 ± 0.0
4.624LysVal: 4.624 ± 0.0
0.991LysTrp: 0.991 ± 0.0
1.651LysTyr: 1.651 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.954LeuAla: 4.954 ± 0.0
1.651LeuCys: 1.651 ± 0.0
4.954LeuAsp: 4.954 ± 0.0
6.275LeuGlu: 6.275 ± 0.0
4.293LeuPhe: 4.293 ± 0.0
5.945LeuGly: 5.945 ± 0.0
0.661LeuHis: 0.661 ± 0.0
4.624LeuIle: 4.624 ± 0.0
5.945LeuLys: 5.945 ± 0.0
4.954LeuLeu: 4.954 ± 0.0
1.982LeuMet: 1.982 ± 0.0
4.624LeuAsn: 4.624 ± 0.0
4.954LeuPro: 4.954 ± 0.0
3.303LeuGln: 3.303 ± 0.0
5.284LeuArg: 5.284 ± 0.0
5.614LeuSer: 5.614 ± 0.0
4.954LeuThr: 4.954 ± 0.0
4.293LeuVal: 4.293 ± 0.0
0.661LeuTrp: 0.661 ± 0.0
4.624LeuTyr: 4.624 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.642MetAla: 2.642 ± 0.0
0.991MetCys: 0.991 ± 0.0
1.982MetAsp: 1.982 ± 0.0
0.33MetGlu: 0.33 ± 0.0
0.661MetPhe: 0.661 ± 0.0
0.991MetGly: 0.991 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.991MetLys: 0.991 ± 0.0
1.651MetLeu: 1.651 ± 0.0
0.991MetMet: 0.991 ± 0.0
1.651MetAsn: 1.651 ± 0.0
1.982MetPro: 1.982 ± 0.0
0.0MetGln: 0.0 ± 0.0
1.651MetArg: 1.651 ± 0.0
2.312MetSer: 2.312 ± 0.0
0.33MetThr: 0.33 ± 0.0
0.991MetVal: 0.991 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.963AsnAla: 3.963 ± 0.0
1.651AsnCys: 1.651 ± 0.0
2.312AsnAsp: 2.312 ± 0.0
3.963AsnGlu: 3.963 ± 0.0
4.293AsnPhe: 4.293 ± 0.0
2.312AsnGly: 2.312 ± 0.0
0.661AsnHis: 0.661 ± 0.0
2.972AsnIle: 2.972 ± 0.0
2.972AsnLys: 2.972 ± 0.0
3.963AsnLeu: 3.963 ± 0.0
0.33AsnMet: 0.33 ± 0.0
1.651AsnAsn: 1.651 ± 0.0
0.661AsnPro: 0.661 ± 0.0
2.312AsnGln: 2.312 ± 0.0
2.642AsnArg: 2.642 ± 0.0
4.624AsnSer: 4.624 ± 0.0
4.293AsnThr: 4.293 ± 0.0
5.614AsnVal: 5.614 ± 0.0
1.321AsnTrp: 1.321 ± 0.0
1.982AsnTyr: 1.982 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.303ProAla: 3.303 ± 0.0
0.33ProCys: 0.33 ± 0.0
1.982ProAsp: 1.982 ± 0.0
1.651ProGlu: 1.651 ± 0.0
3.633ProPhe: 3.633 ± 0.0
2.642ProGly: 2.642 ± 0.0
0.33ProHis: 0.33 ± 0.0
4.293ProIle: 4.293 ± 0.0
2.972ProLys: 2.972 ± 0.0
3.633ProLeu: 3.633 ± 0.0
1.321ProMet: 1.321 ± 0.0
2.972ProAsn: 2.972 ± 0.0
0.991ProPro: 0.991 ± 0.0
0.661ProGln: 0.661 ± 0.0
1.651ProArg: 1.651 ± 0.0
4.954ProSer: 4.954 ± 0.0
3.963ProThr: 3.963 ± 0.0
3.963ProVal: 3.963 ± 0.0
0.33ProTrp: 0.33 ± 0.0
0.991ProTyr: 0.991 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.633GlnAla: 3.633 ± 0.0
0.33GlnCys: 0.33 ± 0.0
0.991GlnAsp: 0.991 ± 0.0
2.972GlnGlu: 2.972 ± 0.0
1.651GlnPhe: 1.651 ± 0.0
1.651GlnGly: 1.651 ± 0.0
0.33GlnHis: 0.33 ± 0.0
1.651GlnIle: 1.651 ± 0.0
2.312GlnLys: 2.312 ± 0.0
4.293GlnLeu: 4.293 ± 0.0
1.982GlnMet: 1.982 ± 0.0
0.661GlnAsn: 0.661 ± 0.0
1.321GlnPro: 1.321 ± 0.0
0.661GlnGln: 0.661 ± 0.0
2.642GlnArg: 2.642 ± 0.0
4.293GlnSer: 4.293 ± 0.0
2.972GlnThr: 2.972 ± 0.0
2.312GlnVal: 2.312 ± 0.0
1.321GlnTrp: 1.321 ± 0.0
1.982GlnTyr: 1.982 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.633ArgAla: 3.633 ± 0.0
0.661ArgCys: 0.661 ± 0.0
2.642ArgAsp: 2.642 ± 0.0
2.972ArgGlu: 2.972 ± 0.0
2.312ArgPhe: 2.312 ± 0.0
1.982ArgGly: 1.982 ± 0.0
0.661ArgHis: 0.661 ± 0.0
3.963ArgIle: 3.963 ± 0.0
1.982ArgLys: 1.982 ± 0.0
4.954ArgLeu: 4.954 ± 0.0
0.661ArgMet: 0.661 ± 0.0
2.312ArgAsn: 2.312 ± 0.0
1.982ArgPro: 1.982 ± 0.0
3.633ArgGln: 3.633 ± 0.0
1.982ArgArg: 1.982 ± 0.0
2.642ArgSer: 2.642 ± 0.0
0.991ArgThr: 0.991 ± 0.0
2.642ArgVal: 2.642 ± 0.0
1.321ArgTrp: 1.321 ± 0.0
0.991ArgTyr: 0.991 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.284SerAla: 5.284 ± 0.0
1.651SerCys: 1.651 ± 0.0
3.963SerAsp: 3.963 ± 0.0
3.963SerGlu: 3.963 ± 0.0
6.275SerPhe: 6.275 ± 0.0
3.963SerGly: 3.963 ± 0.0
1.321SerHis: 1.321 ± 0.0
5.945SerIle: 5.945 ± 0.0
4.624SerLys: 4.624 ± 0.0
6.605SerLeu: 6.605 ± 0.0
1.321SerMet: 1.321 ± 0.0
4.293SerAsn: 4.293 ± 0.0
4.293SerPro: 4.293 ± 0.0
4.954SerGln: 4.954 ± 0.0
4.293SerArg: 4.293 ± 0.0
7.926SerSer: 7.926 ± 0.0
4.624SerThr: 4.624 ± 0.0
7.266SerVal: 7.266 ± 0.0
1.651SerTrp: 1.651 ± 0.0
2.312SerTyr: 2.312 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.624ThrAla: 4.624 ± 0.0
0.661ThrCys: 0.661 ± 0.0
3.963ThrAsp: 3.963 ± 0.0
1.651ThrGlu: 1.651 ± 0.0
1.982ThrPhe: 1.982 ± 0.0
1.321ThrGly: 1.321 ± 0.0
1.651ThrHis: 1.651 ± 0.0
5.284ThrIle: 5.284 ± 0.0
3.963ThrLys: 3.963 ± 0.0
4.954ThrLeu: 4.954 ± 0.0
0.991ThrMet: 0.991 ± 0.0
4.624ThrAsn: 4.624 ± 0.0
2.642ThrPro: 2.642 ± 0.0
1.982ThrGln: 1.982 ± 0.0
2.312ThrArg: 2.312 ± 0.0
7.266ThrSer: 7.266 ± 0.0
1.321ThrThr: 1.321 ± 0.0
3.963ThrVal: 3.963 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
2.642ThrTyr: 2.642 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
8.256ValAla: 8.256 ± 0.0
0.991ValCys: 0.991 ± 0.0
3.963ValAsp: 3.963 ± 0.0
4.954ValGlu: 4.954 ± 0.0
4.293ValPhe: 4.293 ± 0.0
3.633ValGly: 3.633 ± 0.0
1.321ValHis: 1.321 ± 0.0
3.303ValIle: 3.303 ± 0.0
6.605ValLys: 6.605 ± 0.0
6.605ValLeu: 6.605 ± 0.0
1.321ValMet: 1.321 ± 0.0
3.303ValAsn: 3.303 ± 0.0
3.303ValPro: 3.303 ± 0.0
1.982ValGln: 1.982 ± 0.0
2.972ValArg: 2.972 ± 0.0
5.945ValSer: 5.945 ± 0.0
2.972ValThr: 2.972 ± 0.0
5.284ValVal: 5.284 ± 0.0
1.321ValTrp: 1.321 ± 0.0
2.642ValTyr: 2.642 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.661TrpAla: 0.661 ± 0.0
0.33TrpCys: 0.33 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.661TrpGlu: 0.661 ± 0.0
0.991TrpPhe: 0.991 ± 0.0
0.661TrpGly: 0.661 ± 0.0
0.33TrpHis: 0.33 ± 0.0
0.661TrpIle: 0.661 ± 0.0
0.661TrpLys: 0.661 ± 0.0
2.642TrpLeu: 2.642 ± 0.0
0.33TrpMet: 0.33 ± 0.0
0.33TrpAsn: 0.33 ± 0.0
0.33TrpPro: 0.33 ± 0.0
0.33TrpGln: 0.33 ± 0.0
0.0TrpArg: 0.0 ± 0.0
2.642TrpSer: 2.642 ± 0.0
1.321TrpThr: 1.321 ± 0.0
0.991TrpVal: 0.991 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.33TrpTyr: 0.33 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.321TyrAla: 1.321 ± 0.0
0.33TyrCys: 0.33 ± 0.0
2.642TyrAsp: 2.642 ± 0.0
0.0TyrGlu: 0.0 ± 0.0
1.321TyrPhe: 1.321 ± 0.0
1.982TyrGly: 1.982 ± 0.0
0.0TyrHis: 0.0 ± 0.0
3.303TyrIle: 3.303 ± 0.0
0.991TyrLys: 0.991 ± 0.0
3.963TyrLeu: 3.963 ± 0.0
0.991TyrMet: 0.991 ± 0.0
2.312TyrAsn: 2.312 ± 0.0
2.642TyrPro: 2.642 ± 0.0
1.651TyrGln: 1.651 ± 0.0
1.651TyrArg: 1.651 ± 0.0
3.633TyrSer: 3.633 ± 0.0
2.312TyrThr: 2.312 ± 0.0
3.303TyrVal: 3.303 ± 0.0
0.991TyrTrp: 0.991 ± 0.0
1.321TyrTyr: 1.321 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3029 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski