Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)

Taxonomy: cellular organisms; Bacteria; Acidobacteria; Acidobacteriia; Acidobacteriales; Acidobacteriaceae; Terriglobus; Terriglobus saanensis

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4177 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E8V6D7|E8V6D7_TERSS Uncharacterized protein OS=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) OX=401053 GN=AciPR4_0769 PE=4 SV=1
MM1 pKa = 7.23KK2 pKa = 10.33RR3 pKa = 11.84SLICAGTILVGLTLLSGCGNSSNNGIGSTTPATPPTPLVAGGAANIVVVQNNTLNVATASDD64 pKa = 4.62SILKK68 pKa = 10.53FSTATNGIVAPATSITGPAGFFLSGVATDD97 pKa = 3.55STGNVYY103 pKa = 8.25VTAVSTTTSVSEE115 pKa = 3.85ILVYY119 pKa = 10.43DD120 pKa = 4.43ANATGAATPMRR131 pKa = 11.84TITSTSLIFPIGITVDD147 pKa = 3.53SAGSIYY153 pKa = 10.96VSDD156 pKa = 4.37APSNSLSNLSNPSSIFVFDD175 pKa = 4.35PKK177 pKa = 11.33ANGVSIPTRR186 pKa = 11.84TITGAATLLNQPLSLAVDD204 pKa = 3.88TAGNLYY210 pKa = 10.74VSDD213 pKa = 4.68LVQLGISVFSPTATGNVAPASTISGPATGLVFPANGVALDD253 pKa = 3.93ASNNIYY259 pKa = 10.39VSSADD264 pKa = 3.3PTGNFGVVAEE274 pKa = 5.02FAAGATGNVAPIKK287 pKa = 9.24TVGGATLGANQGLGGVEE304 pKa = 3.7VDD306 pKa = 3.73SVGNIYY312 pKa = 9.15TVGVFGAFNSFFEE325 pKa = 4.5LAAFAPTATGDD336 pKa = 3.51VTPAILDD343 pKa = 3.54TASAFNISNFGLLAIHH359 pKa = 7.33

Molecular weight: 35.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E8V745|E8V745_TERSS Uncharacterized protein OS=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) OX=401053 GN=AciPR4_0852 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.02RR4 pKa = 11.84TFQPNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.87THH17 pKa = 5.78GFLTRR22 pKa = 11.84MKK24 pKa = 9.16TKK26 pKa = 10.54AGQAVLNRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.03GRR40 pKa = 11.84HH41 pKa = 5.72KK42 pKa = 10.29IAVSAGFRR50 pKa = 11.84DD51 pKa = 3.66

Molecular weight: 5.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4177

0

4177

1519388

30

2699

363.8

39.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.644 ± 0.038

0.814 ± 0.011

4.989 ± 0.025

5.363 ± 0.038

4.068 ± 0.025

7.944 ± 0.038

2.275 ± 0.017

5.066 ± 0.028

3.857 ± 0.028

9.992 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.301 ± 0.018

3.479 ± 0.037

5.177 ± 0.026

3.794 ± 0.023

5.981 ± 0.038

6.549 ± 0.035

6.383 ± 0.05

7.245 ± 0.034

1.334 ± 0.015

2.745 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski