Thaumarchaeota archaeon SCGC AC-337_F14

Taxonomy: cellular organisms; Archaea; TACK group; Thaumarchaeota; unclassified Thaumarchaeota

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 560 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A329CLD4|A0A329CLD4_9ARCH Uncharacterized protein OS=Thaumarchaeota archaeon SCGC AC-337_F14 OX=1465461 GN=BGW87_1152 PE=4 SV=1
MM1 pKa = 7.47NSYY4 pKa = 10.87IMLVPVTILILAGTGVVSQAFAATVITIEE33 pKa = 4.14TDD35 pKa = 2.71KK36 pKa = 11.11DD37 pKa = 3.61IYY39 pKa = 11.37DD40 pKa = 3.79HH41 pKa = 7.26ASTIILTGNVDD52 pKa = 3.68PVDD55 pKa = 3.9LRR57 pKa = 11.84GSEE60 pKa = 3.96VTIMCKK66 pKa = 10.19SPGGMGVCGIYY77 pKa = 9.99QLSVNSDD84 pKa = 3.57GNFSVSINTATFLMKK99 pKa = 10.18KK100 pKa = 10.19DD101 pKa = 3.84GIYY104 pKa = 10.3EE105 pKa = 4.01FQANYY110 pKa = 10.59SGLADD115 pKa = 3.36VTVSVEE121 pKa = 3.77LTNAIEE127 pKa = 4.11TSEE130 pKa = 4.15TGTAEE135 pKa = 3.75TGTAVIGTAVTGTGEE150 pKa = 4.16AGTDD154 pKa = 3.1EE155 pKa = 4.19VSFYY159 pKa = 11.4KK160 pKa = 10.66LAPGQIEE167 pKa = 4.06YY168 pKa = 10.45DD169 pKa = 3.6ITCNASPAFFANADD183 pKa = 3.71DD184 pKa = 4.41DD185 pKa = 5.48SIVILLDD192 pKa = 3.49ATDD195 pKa = 5.21DD196 pKa = 4.76GILTITLHH204 pKa = 7.28DD205 pKa = 4.14EE206 pKa = 4.52LIKK209 pKa = 10.98PFDD212 pKa = 4.67DD213 pKa = 3.66GTFVVIVDD221 pKa = 3.83NQVMQDD227 pKa = 3.15FTQIGNTLTIPCLAGTEE244 pKa = 4.24KK245 pKa = 10.5IEE247 pKa = 4.42IHH249 pKa = 6.32GSWAIPEE256 pKa = 4.3FGVIAAMILAVAIISIIVVTAKK278 pKa = 9.5TRR280 pKa = 11.84LSIVPRR286 pKa = 11.84YY287 pKa = 9.45

Molecular weight: 30.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A329CX59|A0A329CX59_9ARCH Uncharacterized protein OS=Thaumarchaeota archaeon SCGC AC-337_F14 OX=1465461 GN=BGW87_10233 PE=4 SV=1
MM1 pKa = 7.19ATSKK5 pKa = 10.86AKK7 pKa = 10.44RR8 pKa = 11.84SAAAKK13 pKa = 9.55KK14 pKa = 9.82AARR17 pKa = 11.84TRR19 pKa = 11.84KK20 pKa = 9.74RR21 pKa = 11.84NAAAKK26 pKa = 7.03NTKK29 pKa = 9.94RR30 pKa = 11.84SAASKK35 pKa = 9.79RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.71SSGGAKK44 pKa = 9.67RR45 pKa = 11.84KK46 pKa = 9.35APKK49 pKa = 10.05RR50 pKa = 11.84KK51 pKa = 9.13APKK54 pKa = 9.96RR55 pKa = 11.84KK56 pKa = 7.59ATKK59 pKa = 10.2RR60 pKa = 11.84KK61 pKa = 6.9ATKK64 pKa = 10.12RR65 pKa = 11.84KK66 pKa = 8.78APKK69 pKa = 9.87RR70 pKa = 11.84KK71 pKa = 9.21APKK74 pKa = 9.6RR75 pKa = 11.84KK76 pKa = 8.99AAAKK80 pKa = 9.59RR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 11.84RR84 pKa = 3.55

Molecular weight: 9.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

560

0

560

139431

26

1264

249.0

28.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.738 ± 0.09

1.11 ± 0.039

5.898 ± 0.068

6.987 ± 0.094

4.277 ± 0.08

6.341 ± 0.096

1.87 ± 0.038

8.784 ± 0.096

9.286 ± 0.134

8.753 ± 0.086

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.454 ± 0.048

5.109 ± 0.079

3.667 ± 0.053

3.037 ± 0.054

3.924 ± 0.076

6.909 ± 0.088

5.389 ± 0.068

6.346 ± 0.079

0.928 ± 0.041

3.192 ± 0.057
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski