Melon partitivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae

Average proteome isoelectric point is 5.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346RRG4|A0A346RRG4_9VIRU Putative coat protein OS=Melon partitivirus OX=2305257 GN=CP PE=4 SV=1
MM1 pKa = 7.58AALGDD6 pKa = 4.39GVPPIADD13 pKa = 3.35NNNPQGRR20 pKa = 11.84DD21 pKa = 3.25ANPIRR26 pKa = 11.84GGTDD30 pKa = 3.19PLRR33 pKa = 11.84RR34 pKa = 11.84ATDD37 pKa = 3.27WLEE40 pKa = 4.42DD41 pKa = 3.47NSKK44 pKa = 8.63ITMTFHH50 pKa = 6.76RR51 pKa = 11.84HH52 pKa = 3.67ANYY55 pKa = 9.86RR56 pKa = 11.84RR57 pKa = 11.84YY58 pKa = 9.1ATLRR62 pKa = 11.84LQEE65 pKa = 4.2MFNALVQLYY74 pKa = 9.5QNIFMSHH81 pKa = 4.26WHH83 pKa = 5.84HH84 pKa = 7.02LRR86 pKa = 11.84RR87 pKa = 11.84TVEE90 pKa = 4.09NYY92 pKa = 8.94QVPAPLAQTPWLYY105 pKa = 10.66VARR108 pKa = 11.84LYY110 pKa = 10.67ISVWIVDD117 pKa = 4.38LYY119 pKa = 11.28ASIRR123 pKa = 11.84RR124 pKa = 11.84ACLRR128 pKa = 11.84VCPEE132 pKa = 4.62AYY134 pKa = 10.08NEE136 pKa = 4.77YY137 pKa = 9.11YY138 pKa = 8.62TQDD141 pKa = 3.35YY142 pKa = 8.56QQVVFEE148 pKa = 4.31YY149 pKa = 11.01DD150 pKa = 3.0AFLSQLLSMIKK161 pKa = 8.46PTVVNLVHH169 pKa = 6.21EE170 pKa = 4.66TTLFVPRR177 pKa = 11.84LAEE180 pKa = 4.29DD181 pKa = 3.65QPFPADD187 pKa = 3.57DD188 pKa = 3.7MNIFGLDD195 pKa = 2.81RR196 pKa = 11.84FDD198 pKa = 4.15YY199 pKa = 11.0NEE201 pKa = 4.03NVVHH205 pKa = 6.37GVISILRR212 pKa = 11.84DD213 pKa = 3.21RR214 pKa = 11.84KK215 pKa = 10.4LMKK218 pKa = 10.17FEE220 pKa = 4.84KK221 pKa = 10.03PSEE224 pKa = 4.27TGFGRR229 pKa = 11.84PFWLFDD235 pKa = 2.98WHH237 pKa = 6.15RR238 pKa = 11.84TGHH241 pKa = 6.24AYY243 pKa = 10.23AWFPAEE249 pKa = 4.07NNYY252 pKa = 10.82DD253 pKa = 3.59MRR255 pKa = 11.84DD256 pKa = 3.3VTVAYY261 pKa = 9.37IVGVACTPKK270 pKa = 10.53LGPRR274 pKa = 11.84DD275 pKa = 3.4IDD277 pKa = 3.55DD278 pKa = 3.7WQHH281 pKa = 5.74FPGNIIPEE289 pKa = 4.09HH290 pKa = 6.55PRR292 pKa = 11.84AEE294 pKa = 3.94DD295 pKa = 3.34HH296 pKa = 6.61VRR298 pKa = 11.84VRR300 pKa = 11.84PVAYY304 pKa = 9.75HH305 pKa = 5.88GAVEE309 pKa = 4.11VRR311 pKa = 11.84TIDD314 pKa = 3.62VQQWTAPPEE323 pKa = 4.25VMSLIQVTLPPAAAQQQQQQQPAAQAQPAPARR355 pKa = 11.84QQPPAQQQQQEE366 pKa = 4.23QGLIRR371 pKa = 11.84YY372 pKa = 7.35NLRR375 pKa = 11.84QGFKK379 pKa = 10.33RR380 pKa = 11.84RR381 pKa = 11.84RR382 pKa = 11.84TDD384 pKa = 3.04PSTSNDD390 pKa = 2.52NDD392 pKa = 3.66MPVEE396 pKa = 4.79DD397 pKa = 4.77IEE399 pKa = 5.26EE400 pKa = 4.53PPQPEE405 pKa = 4.01QGEE408 pKa = 4.47DD409 pKa = 3.67PIHH412 pKa = 6.62PEE414 pKa = 3.86EE415 pKa = 4.34EE416 pKa = 3.79AAPPVEE422 pKa = 4.51PQPDD426 pKa = 4.06PAPAPAPAPQAPAEE440 pKa = 4.59PIITMNRR447 pKa = 11.84VRR449 pKa = 11.84RR450 pKa = 11.84FRR452 pKa = 11.84IITYY456 pKa = 9.39CYY458 pKa = 9.13YY459 pKa = 10.71RR460 pKa = 11.84QVTDD464 pKa = 4.34NEE466 pKa = 4.45DD467 pKa = 3.17LHH469 pKa = 8.3SRR471 pKa = 11.84LAALRR476 pKa = 11.84QVDD479 pKa = 3.92SLIAA483 pKa = 4.04

Molecular weight: 55.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346RRG4|A0A346RRG4_9VIRU Putative coat protein OS=Melon partitivirus OX=2305257 GN=CP PE=4 SV=1
MM1 pKa = 7.3LRR3 pKa = 11.84DD4 pKa = 3.32IRR6 pKa = 11.84NFQLTEE12 pKa = 4.09FNSEE16 pKa = 4.17FEE18 pKa = 4.73LLNDD22 pKa = 3.68THH24 pKa = 6.32PHH26 pKa = 5.6VIRR29 pKa = 11.84RR30 pKa = 11.84EE31 pKa = 4.03AEE33 pKa = 3.85QILVDD38 pKa = 4.1EE39 pKa = 5.0FALSEE44 pKa = 4.8LNGAWPSLYY53 pKa = 10.09DD54 pKa = 3.51QKK56 pKa = 11.5LKK58 pKa = 10.36GWARR62 pKa = 11.84SFYY65 pKa = 9.74TLEE68 pKa = 3.64GHH70 pKa = 5.79MQAIHH75 pKa = 7.02AYY77 pKa = 9.37SNPDD81 pKa = 3.38TPISSLNEE89 pKa = 3.69TIYY92 pKa = 10.8RR93 pKa = 11.84ATIDD97 pKa = 3.43SLKK100 pKa = 10.94NEE102 pKa = 4.31LSSLPTARR110 pKa = 11.84AFDD113 pKa = 3.8VLTEE117 pKa = 3.99LDD119 pKa = 4.08KK120 pKa = 11.15IHH122 pKa = 6.54YY123 pKa = 6.93EE124 pKa = 3.87QSSAAGYY131 pKa = 10.74NYY133 pKa = 9.8IGPKK137 pKa = 9.72GPLYY141 pKa = 10.92GEE143 pKa = 3.8NHH145 pKa = 5.44EE146 pKa = 4.23RR147 pKa = 11.84AIRR150 pKa = 11.84SARR153 pKa = 11.84AVLWSAIRR161 pKa = 11.84DD162 pKa = 3.77EE163 pKa = 5.27DD164 pKa = 3.76GGPAYY169 pKa = 10.4VLRR172 pKa = 11.84NMVPDD177 pKa = 3.51VGYY180 pKa = 8.76TRR182 pKa = 11.84TQLTNLQEE190 pKa = 4.12KK191 pKa = 8.94TKK193 pKa = 10.58VRR195 pKa = 11.84GVWGRR200 pKa = 11.84AFHH203 pKa = 6.66YY204 pKa = 10.28ILLEE208 pKa = 4.32GSSARR213 pKa = 11.84PLLEE217 pKa = 4.37RR218 pKa = 11.84FLEE221 pKa = 4.51HH222 pKa = 6.64DD223 pKa = 3.56TFYY226 pKa = 10.99HH227 pKa = 6.82IGEE230 pKa = 4.65DD231 pKa = 3.71SQLSVPKK238 pKa = 10.54LMSKK242 pKa = 10.59LSSEE246 pKa = 4.45CRR248 pKa = 11.84WIYY251 pKa = 10.84AIDD254 pKa = 3.54WSAFDD259 pKa = 3.51ATVSRR264 pKa = 11.84FEE266 pKa = 3.87IEE268 pKa = 3.75AAFEE272 pKa = 3.98IMKK275 pKa = 10.64GLIHH279 pKa = 6.79FPNFDD284 pKa = 3.53SEE286 pKa = 4.65QAFEE290 pKa = 4.2LSRR293 pKa = 11.84LLFTHH298 pKa = 6.76KK299 pKa = 10.38KK300 pKa = 8.26IAAPDD305 pKa = 3.27GHH307 pKa = 6.56TYY309 pKa = 9.86WIHH312 pKa = 6.71KK313 pKa = 7.85GIPSGSYY320 pKa = 6.7FTSMAGSIINRR331 pKa = 11.84LRR333 pKa = 11.84IGYY336 pKa = 8.8LWRR339 pKa = 11.84LMFNRR344 pKa = 11.84EE345 pKa = 3.67PKK347 pKa = 10.31LCYY350 pKa = 9.16TQGDD354 pKa = 3.91DD355 pKa = 5.12SLIGDD360 pKa = 4.86DD361 pKa = 5.46EE362 pKa = 5.31LIQPEE367 pKa = 4.37RR368 pKa = 11.84LAEE371 pKa = 3.93LAAPLNWNINPNKK384 pKa = 9.27TEE386 pKa = 3.87YY387 pKa = 10.84SRR389 pKa = 11.84TPEE392 pKa = 4.34FISFLGRR399 pKa = 11.84TSRR402 pKa = 11.84GGFNTRR408 pKa = 11.84EE409 pKa = 3.96LEE411 pKa = 3.86KK412 pKa = 10.69CLRR415 pKa = 11.84LLIFPEE421 pKa = 4.32HH422 pKa = 6.71PVPSGRR428 pKa = 11.84ISAYY432 pKa = 8.99RR433 pKa = 11.84ARR435 pKa = 11.84SINEE439 pKa = 3.68DD440 pKa = 3.39SGFTSDD446 pKa = 4.99YY447 pKa = 8.73IQTVARR453 pKa = 11.84RR454 pKa = 11.84LRR456 pKa = 11.84RR457 pKa = 11.84RR458 pKa = 11.84YY459 pKa = 9.99GIAEE463 pKa = 3.98EE464 pKa = 4.61SEE466 pKa = 4.24VPKK469 pKa = 10.19MFKK472 pKa = 10.21RR473 pKa = 11.84YY474 pKa = 7.63VVRR477 pKa = 5.09

Molecular weight: 54.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

960

477

483

480.0

55.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.333 ± 0.789

0.729 ± 0.066

5.729 ± 0.594

6.979 ± 0.784

4.271 ± 0.498

4.688 ± 0.774

3.021 ± 0.056

6.042 ± 0.574

2.604 ± 0.766

8.333 ± 1.133

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.979 ± 0.198

4.375 ± 0.119

7.5 ± 1.754

5.313 ± 1.831

8.229 ± 0.103

5.417 ± 1.807

4.896 ± 0.089

5.208 ± 1.214

1.875 ± 0.008

4.479 ± 0.087
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski