Serinus canaria papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Etapapillomavirus; unclassified Etapapillomavirus

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2L2P5B7|A0A2L2P5B7_9PAPI L2 OS=Serinus canaria papillomavirus 1 OX=2094713 PE=4 SV=1
MM1 pKa = 7.69PRR3 pKa = 11.84QPLWSPPVRR12 pKa = 11.84QPEE15 pKa = 4.23EE16 pKa = 3.84NDD18 pKa = 2.85EE19 pKa = 5.59DD20 pKa = 4.05IDD22 pKa = 4.25FNLFIDD28 pKa = 4.33DD29 pKa = 4.58SEE31 pKa = 4.82NNSSDD36 pKa = 4.76SEE38 pKa = 4.53GSWEE42 pKa = 4.55LCLTVQGSEE51 pKa = 4.12HH52 pKa = 6.66VFDD55 pKa = 5.02GLSEE59 pKa = 4.07DD60 pKa = 4.02VEE62 pKa = 4.74GGEE65 pKa = 4.25SDD67 pKa = 5.34SYY69 pKa = 11.3IQGLDD74 pKa = 3.53VPDD77 pKa = 4.94GVCPSLVCTEE87 pKa = 4.78DD88 pKa = 3.55PSFSSPEE95 pKa = 4.12LGIHH99 pKa = 6.67PALTPGLFTTAPEE112 pKa = 4.4VVPPPYY118 pKa = 9.88RR119 pKa = 11.84PPPPYY124 pKa = 9.84PGLPPPYY131 pKa = 9.32RR132 pKa = 11.84PQPPPCRR139 pKa = 11.84PPPPPCRR146 pKa = 11.84PPPPPYY152 pKa = 10.04RR153 pKa = 11.84PPPPPYY159 pKa = 9.9RR160 pKa = 11.84PPPPPYY166 pKa = 9.94RR167 pKa = 11.84PPACPTPAYY176 pKa = 9.45PEE178 pKa = 4.7LPACRR183 pKa = 11.84YY184 pKa = 5.58TAPGIGSAYY193 pKa = 8.91GQNPGPYY200 pKa = 8.5GQNPSYY206 pKa = 10.13EE207 pKa = 4.12PSYY210 pKa = 10.28EE211 pKa = 3.85PSYY214 pKa = 10.46QPSYY218 pKa = 9.79QPSYY222 pKa = 9.8QPSYY226 pKa = 9.97QQDD229 pKa = 3.62PYY231 pKa = 10.76YY232 pKa = 10.52GQNPGHH238 pKa = 6.07GQDD241 pKa = 3.82PASGQLPNGPPASAPYY257 pKa = 9.74YY258 pKa = 10.22PPDD261 pKa = 3.7TLQVGLDD268 pKa = 3.65VEE270 pKa = 4.45DD271 pKa = 4.57QEE273 pKa = 5.79DD274 pKa = 4.55GPGYY278 pKa = 10.36SISTNWACTICGNPLTLTDD297 pKa = 4.24LLMYY301 pKa = 10.15EE302 pKa = 4.87PVSQAQQLGVCYY314 pKa = 10.24LCYY317 pKa = 10.24SGQSLEE323 pKa = 5.17DD324 pKa = 3.6LFASS328 pKa = 4.24

Molecular weight: 35.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2L2P5B0|A0A2L2P5B0_9PAPI Major capsid protein L1 OS=Serinus canaria papillomavirus 1 OX=2094713 GN=L1 PE=3 SV=1
MM1 pKa = 7.58PMWTVLGLSDD11 pKa = 4.37EE12 pKa = 4.78VPDD15 pKa = 3.82EE16 pKa = 4.42VPVPVHH22 pKa = 5.86EE23 pKa = 4.43STRR26 pKa = 11.84EE27 pKa = 3.99DD28 pKa = 3.54EE29 pKa = 4.4VDD31 pKa = 3.25RR32 pKa = 11.84SLVSTPPPPDD42 pKa = 3.26LSRR45 pKa = 11.84YY46 pKa = 7.99SPRR49 pKa = 11.84PSAPRR54 pKa = 11.84KK55 pKa = 9.16GKK57 pKa = 7.3GTRR60 pKa = 11.84VVRR63 pKa = 11.84PTRR66 pKa = 11.84PGPSGRR72 pKa = 11.84SSTQATQPRR81 pKa = 11.84QPATSRR87 pKa = 11.84QSVRR91 pKa = 11.84QSRR94 pKa = 11.84EE95 pKa = 3.48GLKK98 pKa = 10.49RR99 pKa = 11.84PLQPPTPDD107 pKa = 2.72EE108 pKa = 4.36VGTVHH113 pKa = 7.01SSSHH117 pKa = 5.93HH118 pKa = 5.54GGTRR122 pKa = 11.84VDD124 pKa = 5.05RR125 pKa = 11.84LIQDD129 pKa = 3.34ARR131 pKa = 11.84DD132 pKa = 3.6PPGLCFEE139 pKa = 5.03GKK141 pKa = 8.43TNQLKK146 pKa = 9.62TIRR149 pKa = 11.84QRR151 pKa = 11.84IFGGQLPFEE160 pKa = 4.31RR161 pKa = 11.84VSTTWHH167 pKa = 5.48WVKK170 pKa = 10.97KK171 pKa = 10.45DD172 pKa = 3.44GEE174 pKa = 4.43SDD176 pKa = 3.64SKK178 pKa = 11.16ILVVFKK184 pKa = 10.66DD185 pKa = 3.15KK186 pKa = 10.78KK187 pKa = 10.98DD188 pKa = 3.23RR189 pKa = 11.84DD190 pKa = 3.81FFQKK194 pKa = 10.38SFYY197 pKa = 10.27VGSSGVRR204 pKa = 11.84VFHH207 pKa = 7.11CSLAGLL213 pKa = 4.12

Molecular weight: 23.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2925

83

678

365.6

40.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.154 ± 0.635

2.12 ± 0.556

6.017 ± 0.315

5.709 ± 0.324

3.487 ± 0.36

7.556 ± 0.934

2.154 ± 0.324

3.897 ± 0.458

3.658 ± 0.777

8.308 ± 0.897

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.436 ± 0.226

3.179 ± 0.536

9.299 ± 1.807

4.821 ± 0.414

7.214 ± 0.679

8.068 ± 0.545

5.231 ± 0.646

6.359 ± 0.887

1.607 ± 0.132

3.726 ± 0.58
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski