Okibacterium fritillariae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Okibacterium

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2806 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T5KWD8|A0A1T5KWD8_9MICO Antibiotic biosynthesis monooxygenase OS=Okibacterium fritillariae OX=123320 GN=SAMN06309945_2552 PE=4 SV=1
MM1 pKa = 7.91RR2 pKa = 11.84EE3 pKa = 3.34RR4 pKa = 11.84GARR7 pKa = 11.84AGARR11 pKa = 11.84AGSGIGATRR20 pKa = 11.84RR21 pKa = 11.84ADD23 pKa = 3.21ARR25 pKa = 11.84AISALAVLAAGALALTACSGAGSGDD50 pKa = 3.2GSGGDD55 pKa = 3.67TEE57 pKa = 5.35APASATPAFAIDD69 pKa = 4.07QDD71 pKa = 4.25FPDD74 pKa = 4.86PDD76 pKa = 3.63VLRR79 pKa = 11.84VGDD82 pKa = 3.92TYY84 pKa = 11.5YY85 pKa = 11.15AYY87 pKa = 9.46ATNSPAANLQYY98 pKa = 10.31ATSTDD103 pKa = 3.6LEE105 pKa = 4.51TWQVAGDD112 pKa = 4.0DD113 pKa = 4.47AFPDD117 pKa = 3.89LPAWADD123 pKa = 3.72EE124 pKa = 4.09GRR126 pKa = 11.84TWAPDD131 pKa = 3.34VTEE134 pKa = 4.29LADD137 pKa = 4.1GRR139 pKa = 11.84FALYY143 pKa = 8.05FTAQDD148 pKa = 3.57AEE150 pKa = 4.58SGQQCIGAATADD162 pKa = 3.8APTGPFVGASDD173 pKa = 4.06TPLLCPLDD181 pKa = 3.77EE182 pKa = 5.38GGAIDD187 pKa = 5.05ASSFTDD193 pKa = 3.25TDD195 pKa = 3.61GARR198 pKa = 11.84YY199 pKa = 8.93LVWKK203 pKa = 10.63NDD205 pKa = 3.68GNCCGLDD212 pKa = 2.93TWLQLSPLGADD223 pKa = 3.52GVTLAGEE230 pKa = 4.33PTRR233 pKa = 11.84LLQQTEE239 pKa = 3.8AWEE242 pKa = 4.8GSLIEE247 pKa = 4.29APVIVKK253 pKa = 10.29HH254 pKa = 6.73DD255 pKa = 3.73DD256 pKa = 3.73SYY258 pKa = 12.13VLFYY262 pKa = 10.95SANDD266 pKa = 3.73YY267 pKa = 11.26GGEE270 pKa = 4.11AYY272 pKa = 8.77ATGYY276 pKa = 8.43ATATALAGPYY286 pKa = 8.76TKK288 pKa = 10.77ADD290 pKa = 3.6GPLLTTEE297 pKa = 4.28ITDD300 pKa = 3.61DD301 pKa = 4.05AYY303 pKa = 11.29VGPGGQDD310 pKa = 3.05VVAGPDD316 pKa = 3.23GKK318 pKa = 10.66DD319 pKa = 2.68RR320 pKa = 11.84IFFHH324 pKa = 6.58SWDD327 pKa = 3.39PAIVYY332 pKa = 10.19RR333 pKa = 11.84GMNVLPLSWNGSTPVVDD350 pKa = 5.3LPP352 pKa = 4.44

Molecular weight: 36.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T5IIS8|A0A1T5IIS8_9MICO Excinuclease ABC A subunit OS=Okibacterium fritillariae OX=123320 GN=SAMN06309945_0500 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 10.04VRR4 pKa = 11.84SSIKK8 pKa = 10.0SLKK11 pKa = 8.77NQPGSQVVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GRR24 pKa = 11.84VFVINKK30 pKa = 8.85LNPRR34 pKa = 11.84WKK36 pKa = 10.37GRR38 pKa = 11.84QGG40 pKa = 3.06

Molecular weight: 4.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2806

0

2806

947544

29

2226

337.7

36.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.086 ± 0.066

0.432 ± 0.01

6.395 ± 0.061

5.429 ± 0.047

3.204 ± 0.034

8.844 ± 0.044

1.867 ± 0.023

4.697 ± 0.038

2.3 ± 0.034

9.809 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.65 ± 0.015

2.329 ± 0.027

5.458 ± 0.037

2.973 ± 0.029

6.687 ± 0.054

6.254 ± 0.035

6.465 ± 0.045

8.713 ± 0.041

1.391 ± 0.02

2.017 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski