Haemophilus phage SuMu

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F6MIJ4|F6MIJ4_9CAUD Uncharacterized protein OS=Haemophilus phage SuMu OX=483266 GN=SuMu_12 PE=4 SV=1
MM1 pKa = 7.67EE2 pKa = 4.11KK3 pKa = 10.03TYY5 pKa = 10.31FYY7 pKa = 10.55DD8 pKa = 3.08YY9 pKa = 10.25WYY11 pKa = 11.1NKK13 pKa = 10.29DD14 pKa = 4.79DD15 pKa = 4.87IDD17 pKa = 5.7YY18 pKa = 11.32DD19 pKa = 4.04DD20 pKa = 5.78LKK22 pKa = 11.35HH23 pKa = 6.93KK24 pKa = 8.35NTKK27 pKa = 9.91QFTADD32 pKa = 3.14IEE34 pKa = 4.32KK35 pKa = 10.99EE36 pKa = 4.14EE37 pKa = 4.22LSAMAEE43 pKa = 4.43GISAIIIRR51 pKa = 11.84EE52 pKa = 3.81LRR54 pKa = 11.84GNNWGEE60 pKa = 3.87FGEE63 pKa = 4.54GDD65 pKa = 3.59EE66 pKa = 5.36LYY68 pKa = 10.33IAFKK72 pKa = 10.42EE73 pKa = 4.1QGADD77 pKa = 3.06GVMLYY82 pKa = 10.19KK83 pKa = 10.09IKK85 pKa = 10.69EE86 pKa = 4.25VMVPSYY92 pKa = 10.75VAEE95 pKa = 4.05EE96 pKa = 3.91LVGEE100 pKa = 4.12NDD102 pKa = 3.28EE103 pKa = 4.29

Molecular weight: 12.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F6MII9|F6MII9_9CAUD Uncharacterized protein OS=Haemophilus phage SuMu OX=483266 GN=SuMu_7 PE=4 SV=1
MM1 pKa = 8.47RR2 pKa = 11.84YY3 pKa = 8.65RR4 pKa = 11.84QIYY7 pKa = 7.78AAYY10 pKa = 9.71RR11 pKa = 11.84GEE13 pKa = 4.16EE14 pKa = 3.99NVADD18 pKa = 4.14GTAEE22 pKa = 3.78EE23 pKa = 4.4LAIKK27 pKa = 10.54LGVTAKK33 pKa = 9.13TVRR36 pKa = 11.84KK37 pKa = 8.61WSTPSYY43 pKa = 9.74HH44 pKa = 6.75RR45 pKa = 11.84RR46 pKa = 11.84NKK48 pKa = 7.47GQRR51 pKa = 11.84VIVVKK56 pKa = 10.72LGKK59 pKa = 10.22EE60 pKa = 3.97KK61 pKa = 11.0VVV63 pKa = 3.28

Molecular weight: 7.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

11407

37

787

207.4

23.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.986 ± 0.469

1.087 ± 0.15

5.497 ± 0.266

7.154 ± 0.255

3.796 ± 0.192

6.531 ± 0.254

1.727 ± 0.157

5.795 ± 0.221

7.259 ± 0.307

9.249 ± 0.265

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.332 ± 0.142

4.822 ± 0.286

3.209 ± 0.195

5.023 ± 0.184

5.453 ± 0.238

5.882 ± 0.177

4.988 ± 0.272

6.768 ± 0.321

1.438 ± 0.156

3.007 ± 0.145
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski