Bandicoot papillomatosis carcinomatosis virus type 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 5.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B3FN93|B3FN93_9PAPI Small t antigen OS=Bandicoot papillomatosis carcinomatosis virus type 2 OX=500654 GN=stag PE=4 SV=1
MM1 pKa = 7.99DD2 pKa = 4.52NSDD5 pKa = 3.6YY6 pKa = 11.67LEE8 pKa = 3.98FLEE11 pKa = 6.58LIGCDD16 pKa = 3.34TYY18 pKa = 11.57DD19 pKa = 3.59GPEE22 pKa = 4.2NIKK25 pKa = 10.5KK26 pKa = 10.21KK27 pKa = 9.46YY28 pKa = 9.95RR29 pKa = 11.84KK30 pKa = 9.23AALKK34 pKa = 9.58NHH36 pKa = 6.73PDD38 pKa = 3.31KK39 pKa = 11.47GGSANKK45 pKa = 9.24MKK47 pKa = 10.64RR48 pKa = 11.84LNEE51 pKa = 3.74LNQIYY56 pKa = 7.84TEE58 pKa = 4.62CGPPQNKK65 pKa = 9.26RR66 pKa = 11.84YY67 pKa = 9.58RR68 pKa = 11.84PSSHH72 pKa = 7.04YY73 pKa = 10.47EE74 pKa = 3.83EE75 pKa = 5.59EE76 pKa = 5.04DD77 pKa = 3.55LFCYY81 pKa = 10.43EE82 pKa = 4.92SGGEE86 pKa = 4.49DD87 pKa = 3.77EE88 pKa = 6.13PDD90 pKa = 3.14TCSYY94 pKa = 10.69NRR96 pKa = 11.84SDD98 pKa = 3.87SGFSEE103 pKa = 4.59GNYY106 pKa = 6.55TTPDD110 pKa = 3.38PSGFSASNVSFSQSCRR126 pKa = 11.84NVKK129 pKa = 10.2LLLDD133 pKa = 3.36ITEE136 pKa = 4.37TLGHH140 pKa = 6.31GRR142 pKa = 11.84HH143 pKa = 6.12CAHH146 pKa = 6.61TLEE149 pKa = 6.3AIDD152 pKa = 5.28KK153 pKa = 8.49NNKK156 pKa = 8.35MDD158 pKa = 3.49WEE160 pKa = 4.35LFDD163 pKa = 4.47TFCATPGNHH172 pKa = 7.08HH173 pKa = 6.31LTIMFIEE180 pKa = 4.34HH181 pKa = 7.39CYY183 pKa = 9.98MKK185 pKa = 10.81LKK187 pKa = 10.35DD188 pKa = 3.95WQWSLMNFVNYY199 pKa = 9.74GPSYY203 pKa = 10.75LEE205 pKa = 4.36EE206 pKa = 4.48IKK208 pKa = 10.74EE209 pKa = 3.89AANAINWSQLDD220 pKa = 3.67DD221 pKa = 4.18MIFSS225 pKa = 4.14

Molecular weight: 25.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B3FN93|B3FN93_9PAPI Small t antigen OS=Bandicoot papillomatosis carcinomatosis virus type 2 OX=500654 GN=stag PE=4 SV=1
MM1 pKa = 7.93AIWQPNGKK9 pKa = 9.93VYY11 pKa = 10.68LPPSAPVARR20 pKa = 11.84ILNTEE25 pKa = 4.21EE26 pKa = 3.93YY27 pKa = 9.77IQRR30 pKa = 11.84TNLFYY35 pKa = 10.66HH36 pKa = 6.99ANTEE40 pKa = 3.95RR41 pKa = 11.84LLTVGHH47 pKa = 7.43PYY49 pKa = 10.94YY50 pKa = 10.38EE51 pKa = 4.34IKK53 pKa = 10.89DD54 pKa = 3.69NLDD57 pKa = 3.3PSKK60 pKa = 10.77IGVPKK65 pKa = 10.6VSANQYY71 pKa = 8.75RR72 pKa = 11.84VFRR75 pKa = 11.84IKK77 pKa = 10.92LPDD80 pKa = 4.01PNRR83 pKa = 11.84FALGDD88 pKa = 3.44KK89 pKa = 10.45SLYY92 pKa = 10.63DD93 pKa = 3.64PEE95 pKa = 4.66KK96 pKa = 10.7EE97 pKa = 3.83RR98 pKa = 11.84LVWGVRR104 pKa = 11.84GLEE107 pKa = 4.05IEE109 pKa = 4.3RR110 pKa = 11.84GQPLNVGSSGNVLYY124 pKa = 11.19NKK126 pKa = 10.15FKK128 pKa = 10.46DD129 pKa = 3.7TEE131 pKa = 4.25NPNNYY136 pKa = 9.68AKK138 pKa = 10.57EE139 pKa = 4.47GEE141 pKa = 4.28DD142 pKa = 3.25EE143 pKa = 4.24RR144 pKa = 11.84QNVSHH149 pKa = 7.51DD150 pKa = 3.78PKK152 pKa = 10.69QMQMLLVGCKK162 pKa = 9.37PATGEE167 pKa = 3.82HH168 pKa = 6.02WDD170 pKa = 3.59AAKK173 pKa = 9.44TCAEE177 pKa = 4.09RR178 pKa = 11.84PPNKK182 pKa = 9.82GDD184 pKa = 3.8CPPLEE189 pKa = 4.32LVNSIIEE196 pKa = 4.65DD197 pKa = 3.37GDD199 pKa = 4.03MIDD202 pKa = 4.24IGYY205 pKa = 10.86GNLNFKK211 pKa = 7.55TLCGNKK217 pKa = 9.67SDD219 pKa = 4.25VPLDD223 pKa = 3.35INTTTTKK230 pKa = 10.77YY231 pKa = 10.55PDD233 pKa = 3.9FLKK236 pKa = 8.54MTSDD240 pKa = 3.44QYY242 pKa = 11.69GDD244 pKa = 3.6SLFFYY249 pKa = 9.09TKK251 pKa = 10.34RR252 pKa = 11.84EE253 pKa = 3.93STYY256 pKa = 11.15ARR258 pKa = 11.84HH259 pKa = 5.5FWTRR263 pKa = 11.84GGTPGDD269 pKa = 4.73PIPEE273 pKa = 4.0EE274 pKa = 4.64LFVNPSDD281 pKa = 3.66NQKK284 pKa = 10.0ILGSSTYY291 pKa = 8.56FTVPSGSLVSSEE303 pKa = 3.88SQLFNRR309 pKa = 11.84PYY311 pKa = 9.9WLQKK315 pKa = 10.1ATGQNNGICWNNDD328 pKa = 2.76LFITVVDD335 pKa = 3.59NTRR338 pKa = 11.84NCNFTISVFNKK349 pKa = 9.54ADD351 pKa = 3.35SSQGQTYY358 pKa = 10.26KK359 pKa = 10.75SSNYY363 pKa = 10.51NMFLRR368 pKa = 11.84HH369 pKa = 5.36VEE371 pKa = 3.94EE372 pKa = 4.95FEE374 pKa = 4.85LNFIFEE380 pKa = 4.24ICKK383 pKa = 10.15VPLKK387 pKa = 10.77ADD389 pKa = 3.45VLAHH393 pKa = 6.42INAMDD398 pKa = 3.85PRR400 pKa = 11.84ILEE403 pKa = 4.24DD404 pKa = 3.02WSLGFVPSNNFPLEE418 pKa = 4.04DD419 pKa = 3.31KK420 pKa = 11.15YY421 pKa = 11.57RR422 pKa = 11.84FINSLATRR430 pKa = 11.84CPDD433 pKa = 3.48KK434 pKa = 10.29EE435 pKa = 4.59TPKK438 pKa = 10.66EE439 pKa = 3.94KK440 pKa = 10.11EE441 pKa = 3.59DD442 pKa = 3.89PYY444 pKa = 10.97RR445 pKa = 11.84SNTFWTVEE453 pKa = 3.82LEE455 pKa = 3.97EE456 pKa = 4.57RR457 pKa = 11.84MSSEE461 pKa = 3.91LDD463 pKa = 3.2QYY465 pKa = 11.36PLGRR469 pKa = 11.84KK470 pKa = 8.67FLFQSNISSINTVAKK485 pKa = 9.24PRR487 pKa = 11.84KK488 pKa = 9.31RR489 pKa = 11.84KK490 pKa = 8.58ATTPTTKK497 pKa = 9.76TKK499 pKa = 10.2RR500 pKa = 11.84RR501 pKa = 11.84KK502 pKa = 9.36

Molecular weight: 57.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1196

225

502

398.7

44.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.264 ± 0.137

1.505 ± 0.583

6.689 ± 0.359

6.773 ± 0.428

4.515 ± 0.24

6.773 ± 0.707

1.672 ± 0.478

6.187 ± 1.033

5.769 ± 0.871

7.776 ± 0.138

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.756 ± 0.347

6.856 ± 0.869

7.191 ± 0.758

2.926 ± 0.188

5.1 ± 0.506

7.609 ± 0.412

6.438 ± 0.391

5.435 ± 1.185

1.003 ± 0.442

3.763 ± 0.558
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski