Pteropus associated gemycircularvirus 6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus ptero6

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140CTP3|A0A140CTP3_9VIRU RepA OS=Pteropus associated gemycircularvirus 6 OX=1985400 PE=3 SV=1
MM1 pKa = 7.75PSDD4 pKa = 3.63FHH6 pKa = 7.2LKK8 pKa = 8.85NRR10 pKa = 11.84RR11 pKa = 11.84YY12 pKa = 10.59VLFTYY17 pKa = 10.25SQAGPDD23 pKa = 3.36FDD25 pKa = 3.8YY26 pKa = 10.74WAVVDD31 pKa = 5.11LLGDD35 pKa = 4.15LGAEE39 pKa = 4.22CIIGRR44 pKa = 11.84EE45 pKa = 3.92EE46 pKa = 3.9HH47 pKa = 6.94ADD49 pKa = 3.49GGIHH53 pKa = 5.86FHH55 pKa = 6.37VFTDD59 pKa = 4.01FGRR62 pKa = 11.84LFSTRR67 pKa = 11.84KK68 pKa = 9.62VRR70 pKa = 11.84VFDD73 pKa = 4.04VGGKK77 pKa = 9.28HH78 pKa = 6.77PNIQPIGRR86 pKa = 11.84TPAKK90 pKa = 10.28AYY92 pKa = 10.44DD93 pKa = 3.71YY94 pKa = 10.64AIKK97 pKa = 10.92DD98 pKa = 3.52GDD100 pKa = 4.04VVAGGLGRR108 pKa = 11.84PGGDD112 pKa = 4.46CDD114 pKa = 3.84WDD116 pKa = 3.81PDD118 pKa = 4.21NFWSSAAHH126 pKa = 6.45CGSADD131 pKa = 3.72EE132 pKa = 5.03FLHH135 pKa = 7.02FCDD138 pKa = 4.14QLAPRR143 pKa = 11.84DD144 pKa = 4.14LIRR147 pKa = 11.84SFPNFRR153 pKa = 11.84AYY155 pKa = 10.47ANWKK159 pKa = 8.17WDD161 pKa = 3.4TGVPEE166 pKa = 3.96YY167 pKa = 10.18SQPVGAVFDD176 pKa = 3.84TTAAPGIDD184 pKa = 2.86EE185 pKa = 4.56WLRR188 pKa = 11.84KK189 pKa = 9.9SLVLFGPYY197 pKa = 10.43GCGKK201 pKa = 7.39TVWARR206 pKa = 11.84SLNTHH211 pKa = 6.78IYY213 pKa = 10.3FGSQWSGKK221 pKa = 7.77VAFQGIEE228 pKa = 3.89SAEE231 pKa = 3.83YY232 pKa = 10.43AIFDD236 pKa = 3.72DD237 pKa = 4.09WKK239 pKa = 10.96GGLKK243 pKa = 10.25GLPGYY248 pKa = 10.24KK249 pKa = 9.7DD250 pKa = 2.78WFGAQWHH257 pKa = 5.05VSMRR261 pKa = 11.84QLHH264 pKa = 6.15HH265 pKa = 7.33DD266 pKa = 3.41ARR268 pKa = 11.84LVEE271 pKa = 4.22WGRR274 pKa = 11.84PIIWLCNRR282 pKa = 11.84DD283 pKa = 3.74PRR285 pKa = 11.84ILSHH289 pKa = 6.61EE290 pKa = 4.1RR291 pKa = 11.84DD292 pKa = 3.79EE293 pKa = 6.02IDD295 pKa = 3.48WEE297 pKa = 4.18WMEE300 pKa = 4.05RR301 pKa = 11.84ACDD304 pKa = 3.84FVEE307 pKa = 4.41VTGLLTTFRR316 pKa = 11.84ASTEE320 pKa = 3.82

Molecular weight: 36.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140CTP2|A0A140CTP2_9VIRU Replication-associated protein OS=Pteropus associated gemycircularvirus 6 OX=1985400 PE=3 SV=1
MM1 pKa = 8.08AYY3 pKa = 7.92RR4 pKa = 11.84TLRR7 pKa = 11.84RR8 pKa = 11.84GRR10 pKa = 11.84RR11 pKa = 11.84SYY13 pKa = 8.7TRR15 pKa = 11.84KK16 pKa = 7.68VTRR19 pKa = 11.84STRR22 pKa = 11.84RR23 pKa = 11.84GVRR26 pKa = 11.84TPYY29 pKa = 10.06RR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84SYY34 pKa = 7.54PTRR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84YY41 pKa = 7.08TRR43 pKa = 11.84SGVMSRR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84VLNISSRR58 pKa = 11.84KK59 pKa = 9.42KK60 pKa = 9.03RR61 pKa = 11.84DD62 pKa = 3.34NMVVFSNTTTEE73 pKa = 4.0IPQGNTAYY81 pKa = 10.44AKK83 pKa = 10.68VPAVLNGNATYY94 pKa = 8.99MFPWMPTARR103 pKa = 11.84DD104 pKa = 3.29LTLYY108 pKa = 10.51NGTYY112 pKa = 8.15PTIALQSARR121 pKa = 11.84TASTCFMRR129 pKa = 11.84GVKK132 pKa = 9.39EE133 pKa = 3.85ATNIRR138 pKa = 11.84TDD140 pKa = 5.2SGTAWQWRR148 pKa = 11.84RR149 pKa = 11.84IGFTLKK155 pKa = 10.54GQRR158 pKa = 11.84LYY160 pKa = 10.52QANAATQWFHH170 pKa = 7.44LEE172 pKa = 4.0SSDD175 pKa = 3.74GVLRR179 pKa = 11.84VTNNVAGTPLGQSILDD195 pKa = 3.8LVFDD199 pKa = 4.61GQSGSDD205 pKa = 3.17WLNLFNAKK213 pKa = 9.17IDD215 pKa = 3.62NDD217 pKa = 4.34IISVKK222 pKa = 9.95YY223 pKa = 10.71DD224 pKa = 3.12KK225 pKa = 10.95TRR227 pKa = 11.84TIASGNDD234 pKa = 2.67RR235 pKa = 11.84GIIRR239 pKa = 11.84TYY241 pKa = 10.94HH242 pKa = 6.69DD243 pKa = 3.67WHH245 pKa = 6.89PMNKK249 pKa = 9.51NLVYY253 pKa = 10.9DD254 pKa = 4.52DD255 pKa = 5.2DD256 pKa = 4.49EE257 pKa = 4.54NAAGEE262 pKa = 4.39RR263 pKa = 11.84TTPWSVSGKK272 pKa = 10.17QGMGDD277 pKa = 3.49YY278 pKa = 10.81YY279 pKa = 10.43IIDD282 pKa = 4.4FFQAATGATASDD294 pKa = 3.81HH295 pKa = 7.26LSFAPEE301 pKa = 3.52ATLYY305 pKa = 9.21WHH307 pKa = 7.08EE308 pKa = 4.26KK309 pKa = 9.3

Molecular weight: 35.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

884

255

320

294.7

33.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.937 ± 0.909

1.471 ± 0.429

7.919 ± 0.764

3.281 ± 0.652

5.09 ± 0.76

9.276 ± 0.779

2.715 ± 0.501

4.412 ± 0.192

3.507 ± 0.271

6.335 ± 0.255

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.357 ± 0.451

3.507 ± 0.851

5.204 ± 0.8

2.602 ± 0.252

8.597 ± 1.086

6.222 ± 0.566

6.674 ± 1.516

5.656 ± 0.177

3.281 ± 0.671

3.959 ± 0.44
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski