Capybara microvirus Cap3_SP_632

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVV2|A0A4V1FVV2_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_632 OX=2585484 PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 10.1FQSKK6 pKa = 9.14FNRR9 pKa = 11.84FAKK12 pKa = 10.18VFSKK16 pKa = 10.73AGEE19 pKa = 3.96PTVTVNILNIDD30 pKa = 3.56GSLAEE35 pKa = 4.82SYY37 pKa = 10.75IDD39 pKa = 5.73DD40 pKa = 4.95LDD42 pKa = 5.2ALIQSNADD50 pKa = 3.37SGDD53 pKa = 3.29VSKK56 pKa = 11.12LIEE59 pKa = 4.51RR60 pKa = 11.84FTLTGDD66 pKa = 3.4DD67 pKa = 3.7SVFNVSNGFYY77 pKa = 10.68GDD79 pKa = 3.52VSGLEE84 pKa = 3.87NLTIHH89 pKa = 7.57DD90 pKa = 3.85YY91 pKa = 9.68SQRR94 pKa = 11.84TSAAIDD100 pKa = 4.26FYY102 pKa = 11.81DD103 pKa = 4.89SLPKK107 pKa = 10.23NIKK110 pKa = 9.54EE111 pKa = 4.3MYY113 pKa = 8.85PSPEE117 pKa = 4.07EE118 pKa = 3.84FFKK121 pKa = 11.35SIDD124 pKa = 3.68DD125 pKa = 4.18PKK127 pKa = 11.03LSEE130 pKa = 4.52AFDD133 pKa = 3.83NFLSISNTKK142 pKa = 9.85TSDD145 pKa = 3.29SDD147 pKa = 5.42DD148 pKa = 3.59EE149 pKa = 6.16GGDD152 pKa = 3.69NNASS156 pKa = 3.25

Molecular weight: 17.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W694|A0A4P8W694_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_632 OX=2585484 PE=4 SV=1
MM1 pKa = 7.79ADD3 pKa = 3.27SYY5 pKa = 12.08YY6 pKa = 11.32NDD8 pKa = 3.55ALKK11 pKa = 10.73LLKK14 pKa = 10.1QEE16 pKa = 4.23QKK18 pKa = 10.6FSRR21 pKa = 11.84EE22 pKa = 3.89TQQLQTNLSNTAHH35 pKa = 5.33QRR37 pKa = 11.84EE38 pKa = 4.54VKK40 pKa = 10.63DD41 pKa = 3.74LVAAGLNPVLSSGGSGASFSISEE64 pKa = 4.38GNSGVASATQYY75 pKa = 10.25MSAKK79 pKa = 9.71IAQEE83 pKa = 3.92TQLAQIAMQKK93 pKa = 10.32EE94 pKa = 3.97IAQIQANAQIKK105 pKa = 9.13AANTSAAATKK115 pKa = 10.17YY116 pKa = 10.55AADD119 pKa = 4.01KK120 pKa = 10.86NYY122 pKa = 10.46EE123 pKa = 4.26SNQYY127 pKa = 8.34TVDD130 pKa = 3.39YY131 pKa = 10.42SRR133 pKa = 11.84NGSVAGTVGSAAKK146 pKa = 10.01QIWNSIKK153 pKa = 10.78KK154 pKa = 9.35FMPKK158 pKa = 10.23DD159 pKa = 3.51NSKK162 pKa = 8.51TFHH165 pKa = 5.86WW166 pKa = 4.56

Molecular weight: 17.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1285

87

578

257.0

29.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.914 ± 1.631

1.634 ± 0.841

7.16 ± 1.03

4.514 ± 0.324

6.693 ± 0.806

6.537 ± 0.307

1.946 ± 0.527

5.681 ± 0.622

5.914 ± 1.196

7.004 ± 0.318

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.556 ± 0.2

6.693 ± 0.316

4.202 ± 0.868

3.424 ± 1.083

4.047 ± 0.726

9.416 ± 0.965

4.903 ± 0.533

5.681 ± 0.382

1.012 ± 0.248

6.07 ± 0.79
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski