Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Trichophyton; Trichophyton benhamiae

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7976 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4AWL6|D4AWL6_ARTBC L-type lectin-like domain-containing protein OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_00582 PE=4 SV=1
MM1 pKa = 7.92DD2 pKa = 6.22PSPSDD7 pKa = 3.47EE8 pKa = 4.33NPDD11 pKa = 3.39YY12 pKa = 10.67KK13 pKa = 10.96QPGDD17 pKa = 3.72HH18 pKa = 7.43DD19 pKa = 4.2LTSGDD24 pKa = 4.04VEE26 pKa = 4.54NEE28 pKa = 4.06TLGDD32 pKa = 4.03DD33 pKa = 3.9YY34 pKa = 11.78CSDD37 pKa = 4.28FVNSQYY43 pKa = 10.64WPVLDD48 pKa = 5.89LPPLTNGSTRR58 pKa = 11.84GTNEE62 pKa = 3.15EE63 pKa = 4.72SFPQGHH69 pKa = 5.58QADD72 pKa = 4.99EE73 pKa = 4.36IYY75 pKa = 10.16EE76 pKa = 4.0YY77 pKa = 10.31PPRR80 pKa = 11.84HH81 pKa = 6.2IEE83 pKa = 4.47AGDD86 pKa = 3.44TGPPGTGSNLEE97 pKa = 4.55GVSTWQDD104 pKa = 2.12IDD106 pKa = 2.5IWRR109 pKa = 11.84NLTTIPP115 pKa = 4.33

Molecular weight: 12.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4AIW3|D4AIW3_ARTBC Cytochrome P450 putative OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_04211 PE=4 SV=1
MM1 pKa = 7.53AGVAAYY7 pKa = 9.42EE8 pKa = 3.99VDD10 pKa = 3.49AAAAAAVAAAAVVAVAVAVAAAAAAGRR37 pKa = 11.84KK38 pKa = 8.59KK39 pKa = 10.24RR40 pKa = 11.84RR41 pKa = 11.84QSQRR45 pKa = 11.84RR46 pKa = 11.84GDD48 pKa = 3.49PATASRR54 pKa = 11.84RR55 pKa = 11.84DD56 pKa = 3.59SEE58 pKa = 4.41PAGTASARR66 pKa = 11.84STAEE70 pKa = 3.74LPSWLLEE77 pKa = 3.92LLEE80 pKa = 4.73GQFSPSGGGSGAGNEE95 pKa = 4.69GAGSLCFRR103 pKa = 11.84GHH105 pKa = 6.9APWACWLAGLLAGWLAAGSRR125 pKa = 11.84DD126 pKa = 3.29LDD128 pKa = 3.52GRR130 pKa = 11.84RR131 pKa = 11.84KK132 pKa = 9.84GRR134 pKa = 11.84PGQGRR139 pKa = 11.84TEE141 pKa = 3.91GSEE144 pKa = 4.19RR145 pKa = 11.84ARR147 pKa = 11.84QDD149 pKa = 3.11GNGRR153 pKa = 11.84RR154 pKa = 11.84SRR156 pKa = 11.84GQDD159 pKa = 2.82GGRR162 pKa = 11.84EE163 pKa = 3.89GDD165 pKa = 3.54AVEE168 pKa = 3.91QRR170 pKa = 11.84QRR172 pKa = 11.84TSSRR176 pKa = 11.84AFCFFFFFFFVSSCRR191 pKa = 11.84FAVFFVSFAAKK202 pKa = 9.9KK203 pKa = 8.82PSPGGDD209 pKa = 2.83HH210 pKa = 6.2VTGFWSS216 pKa = 3.18

Molecular weight: 22.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7976

0

7976

3936409

25

7870

493.5

54.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.173 ± 0.022

1.193 ± 0.01

5.619 ± 0.02

6.395 ± 0.029

3.675 ± 0.018

6.576 ± 0.023

2.388 ± 0.013

5.118 ± 0.021

5.242 ± 0.026

8.871 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.106 ± 0.01

3.816 ± 0.013

6.198 ± 0.034

4.125 ± 0.024

6.078 ± 0.021

8.781 ± 0.032

5.891 ± 0.018

5.771 ± 0.019

1.279 ± 0.008

2.705 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski