Amino acid dipepetide frequency for Molluscum contagiosum virus subtype 1 (MOCV) (MCVI)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.714AlaAla: 11.714 ± 0.66
3.158AlaCys: 3.158 ± 0.392
5.343AlaAsp: 5.343 ± 0.437
5.196AlaGlu: 5.196 ± 0.367
3.856AlaPhe: 3.856 ± 0.278
6.885AlaGly: 6.885 ± 0.499
3.525AlaHis: 3.525 ± 0.324
2.295AlaIle: 2.295 ± 0.229
2.589AlaLys: 2.589 ± 0.198
13.036AlaLeu: 13.036 ± 0.514
1.763AlaMet: 1.763 ± 0.18
2.791AlaAsn: 2.791 ± 0.224
7.436AlaPro: 7.436 ± 0.639
4.131AlaGln: 4.131 ± 0.758
13.422AlaArg: 13.422 ± 0.753
6.793AlaSer: 6.793 ± 0.597
4.205AlaThr: 4.205 ± 0.34
6.702AlaVal: 6.702 ± 0.361
0.679AlaTrp: 0.679 ± 0.106
2.662AlaTyr: 2.662 ± 0.224
0.0AlaXaa: 0.0 ± 0.0
Cys
3.378CysAla: 3.378 ± 0.286
0.9CysCys: 0.9 ± 0.144
0.826CysAsp: 0.826 ± 0.136
2.038CysGlu: 2.038 ± 0.231
1.01CysPhe: 1.01 ± 0.168
1.744CysGly: 1.744 ± 0.208
0.661CysHis: 0.661 ± 0.092
0.845CysIle: 0.845 ± 0.13
0.79CysLys: 0.79 ± 0.104
2.626CysLeu: 2.626 ± 0.247
0.532CysMet: 0.532 ± 0.098
0.569CysAsn: 0.569 ± 0.097
1.359CysPro: 1.359 ± 0.285
0.679CysGln: 0.679 ± 0.115
1.946CysArg: 1.946 ± 0.244
1.744CysSer: 1.744 ± 0.196
1.395CysThr: 1.395 ± 0.179
2.681CysVal: 2.681 ± 0.311
0.257CysTrp: 0.257 ± 0.081
1.028CysTyr: 1.028 ± 0.137
0.0CysXaa: 0.0 ± 0.0
Asp
6.683AspAla: 6.683 ± 0.413
0.808AspCys: 0.808 ± 0.132
2.846AspAsp: 2.846 ± 0.334
3.397AspGlu: 3.397 ± 0.236
2.277AspPhe: 2.277 ± 0.218
3.654AspGly: 3.654 ± 0.369
0.643AspHis: 0.643 ± 0.106
2.075AspIle: 2.075 ± 0.227
1.34AspLys: 1.34 ± 0.209
4.039AspLeu: 4.039 ± 0.282
1.432AspMet: 1.432 ± 0.168
1.267AspAsn: 1.267 ± 0.15
1.873AspPro: 1.873 ± 0.2
0.845AspGln: 0.845 ± 0.121
1.781AspArg: 1.781 ± 0.228
3.544AspSer: 3.544 ± 0.253
2.919AspThr: 2.919 ± 0.251
4.37AspVal: 4.37 ± 0.278
0.367AspTrp: 0.367 ± 0.09
1.689AspTyr: 1.689 ± 0.219
0.0AspXaa: 0.0 ± 0.0
Glu
3.929GluAla: 3.929 ± 0.278
1.267GluCys: 1.267 ± 0.142
3.58GluAsp: 3.58 ± 0.233
3.672GluGlu: 3.672 ± 0.408
2.001GluPhe: 2.001 ± 0.246
2.35GluGly: 2.35 ± 0.232
2.552GluHis: 2.552 ± 0.204
2.148GluIle: 2.148 ± 0.216
2.167GluLys: 2.167 ± 0.24
8.134GluLeu: 8.134 ± 0.383
1.267GluMet: 1.267 ± 0.162
2.24GluAsn: 2.24 ± 0.194
4.241GluPro: 4.241 ± 0.3
2.387GluGln: 2.387 ± 0.287
5.71GluArg: 5.71 ± 0.374
3.268GluSer: 3.268 ± 0.302
3.03GluThr: 3.03 ± 0.242
3.066GluVal: 3.066 ± 0.247
0.367GluTrp: 0.367 ± 0.079
2.185GluTyr: 2.185 ± 0.198
0.0GluXaa: 0.0 ± 0.0
Phe
3.635PheAla: 3.635 ± 0.249
1.34PheCys: 1.34 ± 0.181
2.093PheAsp: 2.093 ± 0.222
2.497PheGlu: 2.497 ± 0.245
2.387PhePhe: 2.387 ± 0.212
2.093PheGly: 2.093 ± 0.205
1.138PheHis: 1.138 ± 0.175
1.23PheIle: 1.23 ± 0.195
0.863PheLys: 0.863 ± 0.181
5.049PheLeu: 5.049 ± 0.373
0.881PheMet: 0.881 ± 0.133
1.23PheAsn: 1.23 ± 0.21
2.038PhePro: 2.038 ± 0.223
0.973PheGln: 0.973 ± 0.132
3.158PheArg: 3.158 ± 0.237
3.544PheSer: 3.544 ± 0.245
1.671PheThr: 1.671 ± 0.186
4.223PheVal: 4.223 ± 0.329
0.33PheTrp: 0.33 ± 0.08
1.322PheTyr: 1.322 ± 0.144
0.0PheXaa: 0.0 ± 0.0
Gly
7.528GlyAla: 7.528 ± 0.445
1.212GlyCys: 1.212 ± 0.168
2.883GlyAsp: 2.883 ± 0.272
3.562GlyGlu: 3.562 ± 0.253
1.891GlyPhe: 1.891 ± 0.179
3.635GlyGly: 3.635 ± 0.44
1.469GlyHis: 1.469 ± 0.234
1.726GlyIle: 1.726 ± 0.212
2.056GlyLys: 2.056 ± 0.223
4.7GlyLeu: 4.7 ± 0.3
1.322GlyMet: 1.322 ± 0.182
1.965GlyAsn: 1.965 ± 0.24
2.607GlyPro: 2.607 ± 0.323
1.304GlyGln: 1.304 ± 0.151
3.617GlyArg: 3.617 ± 0.293
4.131GlySer: 4.131 ± 0.322
4.241GlyThr: 4.241 ± 0.342
4.26GlyVal: 4.26 ± 0.282
0.22GlyTrp: 0.22 ± 0.068
1.524GlyTyr: 1.524 ± 0.167
0.0GlyXaa: 0.0 ± 0.0
His
3.782HisAla: 3.782 ± 0.315
0.918HisCys: 0.918 ± 0.136
1.304HisAsp: 1.304 ± 0.184
1.91HisGlu: 1.91 ± 0.213
1.23HisPhe: 1.23 ± 0.152
1.873HisGly: 1.873 ± 0.213
0.569HisHis: 0.569 ± 0.101
1.047HisIle: 1.047 ± 0.175
0.826HisLys: 0.826 ± 0.133
2.369HisLeu: 2.369 ± 0.201
0.863HisMet: 0.863 ± 0.125
0.734HisAsn: 0.734 ± 0.124
0.936HisPro: 0.936 ± 0.126
0.569HisGln: 0.569 ± 0.113
1.487HisArg: 1.487 ± 0.162
1.506HisSer: 1.506 ± 0.159
1.469HisThr: 1.469 ± 0.167
2.883HisVal: 2.883 ± 0.255
0.386HisTrp: 0.386 ± 0.082
0.79HisTyr: 0.79 ± 0.11
0.0HisXaa: 0.0 ± 0.0
Ile
2.001IleAla: 2.001 ± 0.258
0.698IleCys: 0.698 ± 0.106
1.561IleAsp: 1.561 ± 0.198
1.689IleGlu: 1.689 ± 0.219
1.873IlePhe: 1.873 ± 0.259
1.175IleGly: 1.175 ± 0.154
0.863IleHis: 0.863 ± 0.141
1.193IleIle: 1.193 ± 0.22
1.414IleLys: 1.414 ± 0.246
3.103IleLeu: 3.103 ± 0.286
0.643IleMet: 0.643 ± 0.156
1.45IleAsn: 1.45 ± 0.229
1.689IlePro: 1.689 ± 0.224
0.826IleGln: 0.826 ± 0.143
2.093IleArg: 2.093 ± 0.238
2.387IleSer: 2.387 ± 0.294
1.781IleThr: 1.781 ± 0.197
2.699IleVal: 2.699 ± 0.221
0.275IleTrp: 0.275 ± 0.077
1.304IleTyr: 1.304 ± 0.165
0.0IleXaa: 0.0 ± 0.0
Lys
2.313LysAla: 2.313 ± 0.228
0.753LysCys: 0.753 ± 0.122
1.432LysAsp: 1.432 ± 0.146
1.414LysGlu: 1.414 ± 0.169
1.249LysPhe: 1.249 ± 0.225
1.138LysGly: 1.138 ± 0.156
1.028LysHis: 1.028 ± 0.144
1.708LysIle: 1.708 ± 0.352
2.093LysLys: 2.093 ± 0.272
3.103LysLeu: 3.103 ± 0.297
0.808LysMet: 0.808 ± 0.107
1.414LysAsn: 1.414 ± 0.204
1.395LysPro: 1.395 ± 0.169
1.102LysGln: 1.102 ± 0.146
2.24LysArg: 2.24 ± 0.202
1.744LysSer: 1.744 ± 0.186
1.469LysThr: 1.469 ± 0.212
2.148LysVal: 2.148 ± 0.265
0.092LysTrp: 0.092 ± 0.04
1.34LysTyr: 1.34 ± 0.179
0.0LysXaa: 0.0 ± 0.0
Leu
12.283LeuAla: 12.283 ± 0.61
3.635LeuCys: 3.635 ± 0.308
4.755LeuAsp: 4.755 ± 0.334
7.344LeuGlu: 7.344 ± 0.449
5.123LeuPhe: 5.123 ± 0.318
5.398LeuGly: 5.398 ± 0.33
2.699LeuHis: 2.699 ± 0.228
2.644LeuIle: 2.644 ± 0.286
2.589LeuLys: 2.589 ± 0.254
14.101LeuLeu: 14.101 ± 0.574
2.277LeuMet: 2.277 ± 0.249
2.46LeuAsn: 2.46 ± 0.227
5.472LeuPro: 5.472 ± 0.313
3.654LeuGln: 3.654 ± 0.303
11.806LeuArg: 11.806 ± 0.564
7.161LeuSer: 7.161 ± 0.338
4.59LeuThr: 4.59 ± 0.399
8.373LeuVal: 8.373 ± 0.412
0.9LeuTrp: 0.9 ± 0.152
3.525LeuTyr: 3.525 ± 0.226
0.0LeuXaa: 0.0 ± 0.0
Met
1.873MetAla: 1.873 ± 0.188
0.459MetCys: 0.459 ± 0.095
1.193MetAsp: 1.193 ± 0.157
1.212MetGlu: 1.212 ± 0.149
1.01MetPhe: 1.01 ± 0.152
0.9MetGly: 0.9 ± 0.156
0.863MetHis: 0.863 ± 0.144
0.661MetIle: 0.661 ± 0.143
0.569MetLys: 0.569 ± 0.082
3.011MetLeu: 3.011 ± 0.262
0.33MetMet: 0.33 ± 0.075
0.863MetAsn: 0.863 ± 0.125
1.322MetPro: 1.322 ± 0.151
0.808MetGln: 0.808 ± 0.127
2.295MetArg: 2.295 ± 0.243
1.561MetSer: 1.561 ± 0.17
0.973MetThr: 0.973 ± 0.134
1.249MetVal: 1.249 ± 0.164
0.037MetTrp: 0.037 ± 0.029
0.679MetTyr: 0.679 ± 0.11
0.0MetXaa: 0.0 ± 0.0
Asn
3.103AsnAla: 3.103 ± 0.277
0.734AsnCys: 0.734 ± 0.113
1.212AsnAsp: 1.212 ± 0.17
1.304AsnGlu: 1.304 ± 0.163
1.432AsnPhe: 1.432 ± 0.172
1.873AsnGly: 1.873 ± 0.289
0.845AsnHis: 0.845 ± 0.119
1.395AsnIle: 1.395 ± 0.275
1.506AsnLys: 1.506 ± 0.26
2.626AsnLeu: 2.626 ± 0.239
0.881AsnMet: 0.881 ± 0.135
1.414AsnAsn: 1.414 ± 0.232
1.45AsnPro: 1.45 ± 0.174
0.698AsnGln: 0.698 ± 0.124
1.616AsnArg: 1.616 ± 0.204
2.038AsnSer: 2.038 ± 0.26
1.763AsnThr: 1.763 ± 0.249
2.552AsnVal: 2.552 ± 0.246
0.129AsnTrp: 0.129 ± 0.051
1.304AsnTyr: 1.304 ± 0.163
0.0AsnXaa: 0.0 ± 0.0
Pro
7.454ProAla: 7.454 ± 0.754
1.45ProCys: 1.45 ± 0.195
2.332ProAsp: 2.332 ± 0.198
4.388ProGlu: 4.388 ± 0.276
1.781ProPhe: 1.781 ± 0.195
4.315ProGly: 4.315 ± 0.36
1.175ProHis: 1.175 ± 0.149
1.083ProIle: 1.083 ± 0.16
1.138ProLys: 1.138 ± 0.149
5.141ProLeu: 5.141 ± 0.367
0.863ProMet: 0.863 ± 0.143
1.083ProAsn: 1.083 ± 0.13
4.15ProPro: 4.15 ± 0.508
1.193ProGln: 1.193 ± 0.159
5.398ProArg: 5.398 ± 0.369
3.782ProSer: 3.782 ± 0.336
2.13ProThr: 2.13 ± 0.285
4.223ProVal: 4.223 ± 0.24
0.514ProTrp: 0.514 ± 0.092
1.138ProTyr: 1.138 ± 0.139
0.0ProXaa: 0.0 ± 0.0
Gln
3.36GlnAla: 3.36 ± 0.767
0.624GlnCys: 0.624 ± 0.108
1.836GlnAsp: 1.836 ± 0.226
1.395GlnGlu: 1.395 ± 0.147
0.771GlnPhe: 0.771 ± 0.103
1.487GlnGly: 1.487 ± 0.25
0.881GlnHis: 0.881 ± 0.107
0.863GlnIle: 0.863 ± 0.154
0.771GlnLys: 0.771 ± 0.129
3.929GlnLeu: 3.929 ± 0.305
0.753GlnMet: 0.753 ± 0.113
0.845GlnAsn: 0.845 ± 0.139
1.359GlnPro: 1.359 ± 0.152
1.799GlnGln: 1.799 ± 0.438
2.901GlnArg: 2.901 ± 0.238
1.818GlnSer: 1.818 ± 0.15
1.561GlnThr: 1.561 ± 0.177
1.946GlnVal: 1.946 ± 0.238
0.275GlnTrp: 0.275 ± 0.087
1.102GlnTyr: 1.102 ± 0.173
0.0GlnXaa: 0.0 ± 0.0
Arg
12.981ArgAla: 12.981 ± 0.853
2.093ArgCys: 2.093 ± 0.199
3.929ArgAsp: 3.929 ± 0.317
5.912ArgGlu: 5.912 ± 0.382
3.544ArgPhe: 3.544 ± 0.295
4.535ArgGly: 4.535 ± 0.351
2.332ArgHis: 2.332 ± 0.255
2.442ArgIle: 2.442 ± 0.234
2.681ArgLys: 2.681 ± 0.237
8.152ArgLeu: 8.152 ± 0.359
2.001ArgMet: 2.001 ± 0.197
2.369ArgAsn: 2.369 ± 0.235
3.452ArgPro: 3.452 ± 0.303
2.515ArgGln: 2.515 ± 0.211
7.583ArgArg: 7.583 ± 0.425
6.169ArgSer: 6.169 ± 0.398
4.296ArgThr: 4.296 ± 0.281
7.73ArgVal: 7.73 ± 0.414
0.753ArgTrp: 0.753 ± 0.122
2.681ArgTyr: 2.681 ± 0.239
0.0ArgXaa: 0.0 ± 0.0
Ser
7.858SerAla: 7.858 ± 0.812
1.928SerCys: 1.928 ± 0.203
3.066SerAsp: 3.066 ± 0.288
4.645SerGlu: 4.645 ± 0.331
2.717SerPhe: 2.717 ± 0.216
4.37SerGly: 4.37 ± 0.373
1.193SerHis: 1.193 ± 0.138
2.369SerIle: 2.369 ± 0.229
2.203SerLys: 2.203 ± 0.23
6.243SerLeu: 6.243 ± 0.363
1.799SerMet: 1.799 ± 0.189
1.689SerAsn: 1.689 ± 0.201
3.654SerPro: 3.654 ± 0.239
1.818SerGln: 1.818 ± 0.175
5.251SerArg: 5.251 ± 0.403
6.279SerSer: 6.279 ± 0.585
4.113SerThr: 4.113 ± 0.3
5.673SerVal: 5.673 ± 0.332
0.496SerTrp: 0.496 ± 0.094
2.056SerTyr: 2.056 ± 0.258
0.0SerXaa: 0.0 ± 0.0
Thr
3.764ThrAla: 3.764 ± 0.297
1.395ThrCys: 1.395 ± 0.196
1.91ThrAsp: 1.91 ± 0.196
2.497ThrGlu: 2.497 ± 0.241
1.616ThrPhe: 1.616 ± 0.209
2.883ThrGly: 2.883 ± 0.248
1.634ThrHis: 1.634 ± 0.186
1.597ThrIle: 1.597 ± 0.188
1.432ThrLys: 1.432 ± 0.154
6.812ThrLeu: 6.812 ± 0.399
0.881ThrMet: 0.881 ± 0.137
1.487ThrAsn: 1.487 ± 0.206
3.654ThrPro: 3.654 ± 0.359
1.542ThrGln: 1.542 ± 0.146
5.361ThrArg: 5.361 ± 0.317
3.268ThrSer: 3.268 ± 0.266
2.295ThrThr: 2.295 ± 0.232
3.691ThrVal: 3.691 ± 0.318
0.441ThrTrp: 0.441 ± 0.084
1.506ThrTyr: 1.506 ± 0.154
0.0ThrXaa: 0.0 ± 0.0
Val
6.849ValAla: 6.849 ± 0.427
2.552ValCys: 2.552 ± 0.242
3.874ValAsp: 3.874 ± 0.292
3.25ValGlu: 3.25 ± 0.336
3.856ValPhe: 3.856 ± 0.356
3.342ValGly: 3.342 ± 0.26
2.497ValHis: 2.497 ± 0.194
1.836ValIle: 1.836 ± 0.207
1.873ValLys: 1.873 ± 0.296
10.374ValLeu: 10.374 ± 0.459
1.469ValMet: 1.469 ± 0.165
2.589ValAsn: 2.589 ± 0.252
4.957ValPro: 4.957 ± 0.444
2.479ValGln: 2.479 ± 0.224
7.62ValArg: 7.62 ± 0.467
5.875ValSer: 5.875 ± 0.411
3.764ValThr: 3.764 ± 0.3
5.068ValVal: 5.068 ± 0.325
0.459ValTrp: 0.459 ± 0.078
2.717ValTyr: 2.717 ± 0.268
0.0ValXaa: 0.0 ± 0.0
Trp
0.588TrpAla: 0.588 ± 0.107
0.22TrpCys: 0.22 ± 0.067
0.165TrpAsp: 0.165 ± 0.049
0.459TrpGlu: 0.459 ± 0.085
0.33TrpPhe: 0.33 ± 0.073
0.441TrpGly: 0.441 ± 0.077
0.11TrpHis: 0.11 ± 0.046
0.349TrpIle: 0.349 ± 0.099
0.257TrpLys: 0.257 ± 0.079
0.991TrpLeu: 0.991 ± 0.152
0.22TrpMet: 0.22 ± 0.065
0.257TrpAsn: 0.257 ± 0.091
0.588TrpPro: 0.588 ± 0.111
0.22TrpGln: 0.22 ± 0.061
0.845TrpArg: 0.845 ± 0.131
0.514TrpSer: 0.514 ± 0.092
0.33TrpThr: 0.33 ± 0.083
0.294TrpVal: 0.294 ± 0.076
0.018TrpTrp: 0.018 ± 0.02
0.165TrpTyr: 0.165 ± 0.058
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.103TyrAla: 3.103 ± 0.311
0.863TyrCys: 0.863 ± 0.131
1.708TyrAsp: 1.708 ± 0.182
1.781TyrGlu: 1.781 ± 0.188
1.744TyrPhe: 1.744 ± 0.191
1.781TyrGly: 1.781 ± 0.19
0.771TyrHis: 0.771 ± 0.107
1.212TyrIle: 1.212 ± 0.181
0.826TyrLys: 0.826 ± 0.136
3.25TyrLeu: 3.25 ± 0.278
0.863TyrMet: 0.863 ± 0.18
1.157TyrAsn: 1.157 ± 0.186
1.102TyrPro: 1.102 ± 0.147
0.734TyrGln: 0.734 ± 0.121
2.02TyrArg: 2.02 ± 0.202
2.295TyrSer: 2.295 ± 0.204
1.671TyrThr: 1.671 ± 0.192
3.47TyrVal: 3.47 ± 0.286
0.367TyrTrp: 0.367 ± 0.075
1.542TyrTyr: 1.542 ± 0.176
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 163 proteins (54465 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski