Amino acid dipepetide frequency for Maize streak virus genotype C (isolate Set) (MSV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.093AlaAla: 3.093 ± 1.613
0.0AlaCys: 0.0 ± 0.0
3.093AlaAsp: 3.093 ± 1.792
0.0AlaGlu: 0.0 ± 0.0
0.0AlaPhe: 0.0 ± 0.0
0.0AlaGly: 0.0 ± 0.0
3.093AlaHis: 3.093 ± 0.563
6.186AlaIle: 6.186 ± 2.623
1.031AlaLys: 1.031 ± 0.994
7.216AlaLeu: 7.216 ± 0.767
0.0AlaMet: 0.0 ± 0.835
4.124AlaAsn: 4.124 ± 2.031
5.155AlaPro: 5.155 ± 3.941
1.031AlaGln: 1.031 ± 0.994
5.155AlaArg: 5.155 ± 0.866
2.062AlaSer: 2.062 ± 0.997
2.062AlaThr: 2.062 ± 0.869
1.031AlaVal: 1.031 ± 1.503
1.031AlaTrp: 1.031 ± 0.994
2.062AlaTyr: 2.062 ± 0.997
0.0AlaXaa: 0.0 ± 0.0
Cys
2.062CysAla: 2.062 ± 0.869
0.0CysCys: 0.0 ± 0.0
1.031CysAsp: 1.031 ± 0.994
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
1.031CysHis: 1.031 ± 0.994
1.031CysIle: 1.031 ± 1.503
2.062CysLys: 2.062 ± 1.988
2.062CysLeu: 2.062 ± 0.869
1.031CysMet: 1.031 ± 0.754
2.062CysAsn: 2.062 ± 0.869
3.093CysPro: 3.093 ± 1.368
1.031CysGln: 1.031 ± 0.754
0.0CysArg: 0.0 ± 0.0
2.062CysSer: 2.062 ± 0.869
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
1.031CysTrp: 1.031 ± 0.754
1.031CysTyr: 1.031 ± 0.882
0.0CysXaa: 0.0 ± 0.0
Asp
2.062AspAla: 2.062 ± 0.997
0.0AspCys: 0.0 ± 0.0
3.093AspAsp: 3.093 ± 1.58
5.155AspGlu: 5.155 ± 1.289
1.031AspPhe: 1.031 ± 0.994
6.186AspGly: 6.186 ± 1.126
0.0AspHis: 0.0 ± 0.0
8.247AspIle: 8.247 ± 2.25
2.062AspLys: 2.062 ± 0.869
8.247AspLeu: 8.247 ± 2.407
0.0AspMet: 0.0 ± 0.0
0.0AspAsn: 0.0 ± 0.0
1.031AspPro: 1.031 ± 1.503
0.0AspGln: 0.0 ± 0.0
1.031AspArg: 1.031 ± 1.503
2.062AspSer: 2.062 ± 0.869
4.124AspThr: 4.124 ± 2.738
0.0AspVal: 0.0 ± 0.0
6.186AspTrp: 6.186 ± 2.736
4.124AspTyr: 4.124 ± 0.882
0.0AspXaa: 0.0 ± 0.0
Glu
6.186GluAla: 6.186 ± 0.937
0.0GluCys: 0.0 ± 0.0
2.062GluAsp: 2.062 ± 1.508
4.124GluGlu: 4.124 ± 1.498
3.093GluPhe: 3.093 ± 1.368
1.031GluGly: 1.031 ± 0.994
0.0GluHis: 0.0 ± 0.0
4.124GluIle: 4.124 ± 1.738
4.124GluLys: 4.124 ± 0.882
3.093GluLeu: 3.093 ± 1.394
1.031GluMet: 1.031 ± 0.754
1.031GluAsn: 1.031 ± 0.882
5.155GluPro: 5.155 ± 1.773
3.093GluGln: 3.093 ± 1.58
2.062GluArg: 2.062 ± 0.869
2.062GluSer: 2.062 ± 0.869
2.062GluThr: 2.062 ± 1.988
2.062GluVal: 2.062 ± 1.418
1.031GluTrp: 1.031 ± 0.882
5.155GluTyr: 5.155 ± 2.164
0.0GluXaa: 0.0 ± 0.0
Phe
1.031PheAla: 1.031 ± 0.994
0.0PheCys: 0.0 ± 0.0
2.062PheAsp: 2.062 ± 0.869
5.155PheGlu: 5.155 ± 2.164
2.062PhePhe: 2.062 ± 0.869
1.031PheGly: 1.031 ± 1.503
3.093PheHis: 3.093 ± 0.563
4.124PheIle: 4.124 ± 1.738
2.062PheLys: 2.062 ± 0.95
4.124PheLeu: 4.124 ± 1.738
0.0PheMet: 0.0 ± 0.0
0.0PheAsn: 0.0 ± 0.0
2.062PhePro: 2.062 ± 0.869
0.0PheGln: 0.0 ± 0.0
0.0PheArg: 0.0 ± 0.0
2.062PheSer: 2.062 ± 0.869
3.093PheThr: 3.093 ± 2.982
5.155PheVal: 5.155 ± 3.003
0.0PheTrp: 0.0 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.062GlyAla: 2.062 ± 1.988
1.031GlyCys: 1.031 ± 0.754
1.031GlyAsp: 1.031 ± 0.994
2.062GlyGlu: 2.062 ± 1.418
2.062GlyPhe: 2.062 ± 0.869
5.155GlyGly: 5.155 ± 4.057
0.0GlyHis: 0.0 ± 0.0
1.031GlyIle: 1.031 ± 0.994
3.093GlyLys: 3.093 ± 1.398
1.031GlyLeu: 1.031 ± 0.994
1.031GlyMet: 1.031 ± 1.223
10.309GlyAsn: 10.309 ± 2.343
3.093GlyPro: 3.093 ± 1.395
4.124GlyGln: 4.124 ± 1.052
3.093GlyArg: 3.093 ± 1.394
5.155GlySer: 5.155 ± 2.856
4.124GlyThr: 4.124 ± 0.882
6.186GlyVal: 6.186 ± 4.995
0.0GlyTrp: 0.0 ± 0.0
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
4.124HisAla: 4.124 ± 1.738
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
1.031HisPhe: 1.031 ± 0.994
2.062HisGly: 2.062 ± 0.997
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
1.031HisLys: 1.031 ± 0.994
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
1.031HisAsn: 1.031 ± 0.754
6.186HisPro: 6.186 ± 2.79
0.0HisGln: 0.0 ± 0.0
5.155HisArg: 5.155 ± 1.076
1.031HisSer: 1.031 ± 0.994
1.031HisThr: 1.031 ± 0.994
1.031HisVal: 1.031 ± 1.503
2.062HisTrp: 2.062 ± 0.869
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
1.031IleAla: 1.031 ± 0.994
3.093IleCys: 3.093 ± 1.395
3.093IleAsp: 3.093 ± 1.58
0.0IleGlu: 0.0 ± 0.0
2.062IlePhe: 2.062 ± 1.687
1.031IleGly: 1.031 ± 0.994
0.0IleHis: 0.0 ± 0.0
7.216IleIle: 7.216 ± 3.001
2.062IleLys: 2.062 ± 0.869
3.093IleLeu: 3.093 ± 2.824
3.093IleMet: 3.093 ± 1.58
3.093IleAsn: 3.093 ± 0.563
4.124IlePro: 4.124 ± 1.498
8.247IleGln: 8.247 ± 1.481
0.0IleArg: 0.0 ± 0.0
7.216IleSer: 7.216 ± 3.236
4.124IleThr: 4.124 ± 1.362
2.062IleVal: 2.062 ± 1.508
2.062IleTrp: 2.062 ± 0.869
6.186IleTyr: 6.186 ± 2.785
0.0IleXaa: 0.0 ± 0.0
Lys
2.062LysAla: 2.062 ± 1.687
0.0LysCys: 0.0 ± 0.0
4.124LysAsp: 4.124 ± 1.738
4.124LysGlu: 4.124 ± 2.031
1.031LysPhe: 1.031 ± 0.994
3.093LysGly: 3.093 ± 0.563
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
10.309LysLys: 10.309 ± 2.422
4.124LysLeu: 4.124 ± 1.738
0.0LysMet: 0.0 ± 0.0
1.031LysAsn: 1.031 ± 0.994
7.216LysPro: 7.216 ± 1.274
4.124LysGln: 4.124 ± 1.738
6.186LysArg: 6.186 ± 4.69
7.216LysSer: 7.216 ± 2.076
0.0LysThr: 0.0 ± 0.0
6.186LysVal: 6.186 ± 2.126
1.031LysTrp: 1.031 ± 0.754
3.093LysTyr: 3.093 ± 1.398
0.0LysXaa: 0.0 ± 0.0
Leu
3.093LeuAla: 3.093 ± 1.368
5.155LeuCys: 5.155 ± 1.076
1.031LeuAsp: 1.031 ± 0.882
3.093LeuGlu: 3.093 ± 1.395
5.155LeuPhe: 5.155 ± 1.076
4.124LeuGly: 4.124 ± 0.882
4.124LeuHis: 4.124 ± 1.134
6.186LeuIle: 6.186 ± 4.031
2.062LeuLys: 2.062 ± 1.687
6.186LeuLeu: 6.186 ± 2.024
0.0LeuMet: 0.0 ± 0.0
0.0LeuAsn: 0.0 ± 0.0
4.124LeuPro: 4.124 ± 1.498
6.186LeuGln: 6.186 ± 1.758
1.031LeuArg: 1.031 ± 1.503
3.093LeuSer: 3.093 ± 1.395
4.124LeuThr: 4.124 ± 1.134
4.124LeuVal: 4.124 ± 1.963
1.031LeuTrp: 1.031 ± 1.503
6.186LeuTyr: 6.186 ± 1.11
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
1.031MetAsp: 1.031 ± 1.503
2.062MetGlu: 2.062 ± 0.997
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
2.062MetIle: 2.062 ± 0.95
2.062MetLys: 2.062 ± 1.508
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.0MetPro: 0.0 ± 0.0
1.031MetGln: 1.031 ± 0.754
2.062MetArg: 2.062 ± 0.869
1.031MetSer: 1.031 ± 0.994
3.093MetThr: 3.093 ± 1.368
2.062MetVal: 2.062 ± 0.869
1.031MetTrp: 1.031 ± 0.994
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.031AsnAla: 1.031 ± 0.994
2.062AsnCys: 2.062 ± 0.869
0.0AsnAsp: 0.0 ± 0.0
3.093AsnGlu: 3.093 ± 1.368
0.0AsnPhe: 0.0 ± 0.0
1.031AsnGly: 1.031 ± 0.994
0.0AsnHis: 0.0 ± 0.0
5.155AsnIle: 5.155 ± 2.164
5.155AsnLys: 5.155 ± 1.076
1.031AsnLeu: 1.031 ± 0.882
0.0AsnMet: 0.0 ± 0.0
1.031AsnAsn: 1.031 ± 0.754
3.093AsnPro: 3.093 ± 1.368
4.124AsnGln: 4.124 ± 1.362
4.124AsnArg: 4.124 ± 1.362
5.155AsnSer: 5.155 ± 2.164
4.124AsnThr: 4.124 ± 1.052
3.093AsnVal: 3.093 ± 1.792
0.0AsnTrp: 0.0 ± 0.0
1.031AsnTyr: 1.031 ± 0.754
0.0AsnXaa: 0.0 ± 0.0
Pro
0.0ProAla: 0.0 ± 0.0
2.062ProCys: 2.062 ± 0.95
4.124ProAsp: 4.124 ± 1.738
6.186ProGlu: 6.186 ± 2.607
4.124ProPhe: 4.124 ± 1.498
7.216ProGly: 7.216 ± 3.257
2.062ProHis: 2.062 ± 0.869
1.031ProIle: 1.031 ± 1.503
1.031ProLys: 1.031 ± 0.754
4.124ProLeu: 4.124 ± 1.738
0.0ProMet: 0.0 ± 0.0
10.309ProAsn: 10.309 ± 3.801
4.124ProPro: 4.124 ± 1.9
5.155ProGln: 5.155 ± 1.351
3.093ProArg: 3.093 ± 1.395
6.186ProSer: 6.186 ± 3.295
10.309ProThr: 10.309 ± 3.473
3.093ProVal: 3.093 ± 1.395
0.0ProTrp: 0.0 ± 0.0
2.062ProTyr: 2.062 ± 0.869
0.0ProXaa: 0.0 ± 0.0
Gln
3.093GlnAla: 3.093 ± 0.563
4.124GlnCys: 4.124 ± 1.738
1.031GlnAsp: 1.031 ± 0.994
5.155GlnGlu: 5.155 ± 2.393
0.0GlnPhe: 0.0 ± 0.0
3.093GlnGly: 3.093 ± 2.206
0.0GlnHis: 0.0 ± 0.0
2.062GlnIle: 2.062 ± 0.997
3.093GlnLys: 3.093 ± 1.368
2.062GlnLeu: 2.062 ± 1.508
2.062GlnMet: 2.062 ± 0.862
1.031GlnAsn: 1.031 ± 0.754
6.186GlnPro: 6.186 ± 2.607
1.031GlnGln: 1.031 ± 0.882
3.093GlnArg: 3.093 ± 0.563
4.124GlnSer: 4.124 ± 1.052
4.124GlnThr: 4.124 ± 1.362
1.031GlnVal: 1.031 ± 0.882
2.062GlnTrp: 2.062 ± 1.988
2.062GlnTyr: 2.062 ± 0.869
0.0GlnXaa: 0.0 ± 0.0
Arg
1.031ArgAla: 1.031 ± 0.994
0.0ArgCys: 0.0 ± 0.0
7.216ArgAsp: 7.216 ± 2.418
3.093ArgGlu: 3.093 ± 0.563
3.093ArgPhe: 3.093 ± 0.563
6.186ArgGly: 6.186 ± 2.314
3.093ArgHis: 3.093 ± 1.394
3.093ArgIle: 3.093 ± 0.563
4.124ArgLys: 4.124 ± 0.882
1.031ArgLeu: 1.031 ± 0.994
0.0ArgMet: 0.0 ± 0.0
1.031ArgAsn: 1.031 ± 0.994
2.062ArgPro: 2.062 ± 0.869
0.0ArgGln: 0.0 ± 0.0
3.093ArgArg: 3.093 ± 3.038
6.186ArgSer: 6.186 ± 1.238
4.124ArgThr: 4.124 ± 0.882
1.031ArgVal: 1.031 ± 1.503
1.031ArgTrp: 1.031 ± 0.994
0.0ArgTyr: 0.0 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
8.247SerAla: 8.247 ± 1.224
1.031SerCys: 1.031 ± 0.994
6.186SerAsp: 6.186 ± 1.126
4.124SerGlu: 4.124 ± 1.052
3.093SerPhe: 3.093 ± 1.395
3.093SerGly: 3.093 ± 2.982
7.216SerHis: 7.216 ± 2.418
3.093SerIle: 3.093 ± 1.58
9.278SerLys: 9.278 ± 2.715
5.155SerLeu: 5.155 ± 1.542
2.062SerMet: 2.062 ± 0.869
4.124SerAsn: 4.124 ± 1.362
6.186SerPro: 6.186 ± 2.607
2.062SerGln: 2.062 ± 0.869
3.093SerArg: 3.093 ± 0.563
10.309SerSer: 10.309 ± 4.346
7.216SerThr: 7.216 ± 0.767
2.062SerVal: 2.062 ± 0.997
2.062SerTrp: 2.062 ± 1.687
1.031SerTyr: 1.031 ± 0.754
0.0SerXaa: 0.0 ± 0.0
Thr
3.093ThrAla: 3.093 ± 3.038
0.0ThrCys: 0.0 ± 0.0
4.124ThrAsp: 4.124 ± 1.362
4.124ThrGlu: 4.124 ± 1.498
5.155ThrPhe: 5.155 ± 1.076
3.093ThrGly: 3.093 ± 1.394
0.0ThrHis: 0.0 ± 0.0
2.062ThrIle: 2.062 ± 1.508
5.155ThrLys: 5.155 ± 1.076
4.124ThrLeu: 4.124 ± 3.375
2.062ThrMet: 2.062 ± 1.988
0.0ThrAsn: 0.0 ± 0.0
5.155ThrPro: 5.155 ± 1.289
2.062ThrGln: 2.062 ± 1.988
3.093ThrArg: 3.093 ± 1.398
11.34ThrSer: 11.34 ± 2.668
6.186ThrThr: 6.186 ± 2.314
1.031ThrVal: 1.031 ± 0.994
2.062ThrTrp: 2.062 ± 0.95
4.124ThrTyr: 4.124 ± 1.362
0.0ThrXaa: 0.0 ± 0.0
Val
3.093ValAla: 3.093 ± 3.038
1.031ValCys: 1.031 ± 0.994
5.155ValAsp: 5.155 ± 1.853
1.031ValGlu: 1.031 ± 0.994
0.0ValPhe: 0.0 ± 0.0
6.186ValGly: 6.186 ± 2.581
1.031ValHis: 1.031 ± 1.503
1.031ValIle: 1.031 ± 0.994
1.031ValLys: 1.031 ± 0.994
2.062ValLeu: 2.062 ± 3.007
3.093ValMet: 3.093 ± 1.324
1.031ValAsn: 1.031 ± 0.754
3.093ValPro: 3.093 ± 3.038
4.124ValGln: 4.124 ± 1.738
5.155ValArg: 5.155 ± 1.076
3.093ValSer: 3.093 ± 1.613
1.031ValThr: 1.031 ± 0.994
2.062ValVal: 2.062 ± 0.95
0.0ValTrp: 0.0 ± 0.0
1.031ValTyr: 1.031 ± 0.994
0.0ValXaa: 0.0 ± 0.0
Trp
1.031TrpAla: 1.031 ± 0.754
0.0TrpCys: 0.0 ± 0.0
2.062TrpAsp: 2.062 ± 0.869
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
3.093TrpLys: 3.093 ± 1.792
5.155TrpLeu: 5.155 ± 1.433
1.031TrpMet: 1.031 ± 0.754
1.031TrpAsn: 1.031 ± 0.994
2.062TrpPro: 2.062 ± 1.988
1.031TrpGln: 1.031 ± 0.754
0.0TrpArg: 0.0 ± 0.0
4.124TrpSer: 4.124 ± 1.498
2.062TrpThr: 2.062 ± 0.869
1.031TrpVal: 1.031 ± 1.503
0.0TrpTrp: 0.0 ± 0.0
1.031TrpTyr: 1.031 ± 0.754
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.031TyrAla: 1.031 ± 0.994
1.031TyrCys: 1.031 ± 0.754
3.093TyrAsp: 3.093 ± 0.563
0.0TyrGlu: 0.0 ± 0.0
4.124TyrPhe: 4.124 ± 0.882
2.062TyrGly: 2.062 ± 1.508
1.031TyrHis: 1.031 ± 0.994
5.155TyrIle: 5.155 ± 2.164
1.031TyrLys: 1.031 ± 0.994
6.186TyrLeu: 6.186 ± 2.623
0.0TyrMet: 0.0 ± 0.0
2.062TyrAsn: 2.062 ± 1.508
3.093TyrPro: 3.093 ± 0.563
2.062TyrGln: 2.062 ± 0.869
0.0TyrArg: 0.0 ± 0.0
5.155TyrSer: 5.155 ± 1.076
1.031TyrThr: 1.031 ± 1.503
1.031TyrVal: 1.031 ± 0.754
1.031TyrTrp: 1.031 ± 0.754
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (971 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski