Potato yellow vein virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q70PI3|Q70PI3_9CLOS Uncharacterized protein OS=Potato yellow vein virus OX=103881 PE=4 SV=1
MM1 pKa = 7.42NSISEE6 pKa = 4.89LITEE10 pKa = 4.71FGEE13 pKa = 4.43DD14 pKa = 3.08RR15 pKa = 11.84VDD17 pKa = 4.31EE18 pKa = 4.32IFALHH23 pKa = 6.91RR24 pKa = 11.84SFGQSNPPLCDD35 pKa = 3.03VLLNLISSKK44 pKa = 10.57LFSHH48 pKa = 7.48DD49 pKa = 3.8DD50 pKa = 3.5VFEE53 pKa = 3.94EE54 pKa = 4.9SIIEE58 pKa = 4.17FGDD61 pKa = 3.53LKK63 pKa = 11.3SFLLVTKK70 pKa = 8.56FIRR73 pKa = 11.84GVYY76 pKa = 8.84NSRR79 pKa = 11.84YY80 pKa = 7.51NLRR83 pKa = 11.84YY84 pKa = 9.72

Molecular weight: 9.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q70PI4|Q70PI4_9CLOS p7 OS=Potato yellow vein virus OX=103881 PE=4 SV=1
MM1 pKa = 7.54VSIFRR6 pKa = 11.84SPVVRR11 pKa = 11.84DD12 pKa = 3.65FLSMVFKK19 pKa = 10.81TNDD22 pKa = 3.26PSEE25 pKa = 4.78KK26 pKa = 9.28IGEE29 pKa = 4.08INKK32 pKa = 9.48YY33 pKa = 8.84LVKK36 pKa = 10.63NFHH39 pKa = 7.02IEE41 pKa = 3.92NQNKK45 pKa = 9.06YY46 pKa = 7.97RR47 pKa = 11.84TNIKK51 pKa = 10.31GRR53 pKa = 11.84LTEE56 pKa = 3.89LTSNYY61 pKa = 9.01FVRR64 pKa = 11.84NNEE67 pKa = 3.53IFVNDD72 pKa = 3.79GNFLEE77 pKa = 4.32ILKK80 pKa = 10.61LPVIFMYY87 pKa = 10.66RR88 pKa = 11.84IRR90 pKa = 11.84PEE92 pKa = 3.81LTKK95 pKa = 10.96NSAYY99 pKa = 10.84LPVNIFASYY108 pKa = 10.83NYY110 pKa = 9.87EE111 pKa = 3.83FYY113 pKa = 11.01KK114 pKa = 10.99NSFSPHH120 pKa = 5.54YY121 pKa = 10.81DD122 pKa = 3.0KK123 pKa = 11.42DD124 pKa = 4.14LNSFLSSNKK133 pKa = 10.07EE134 pKa = 3.48IGCLYY139 pKa = 9.47TEE141 pKa = 4.73RR142 pKa = 11.84DD143 pKa = 3.52IQEE146 pKa = 4.86HH147 pKa = 5.9YY148 pKa = 10.51PSVHH152 pKa = 5.33GVRR155 pKa = 11.84LLTLYY160 pKa = 10.08RR161 pKa = 11.84VCNSLGRR168 pKa = 11.84YY169 pKa = 8.81VDD171 pKa = 5.25LNEE174 pKa = 5.15LDD176 pKa = 3.48NGNIKK181 pKa = 10.42GFSIDD186 pKa = 3.88PDD188 pKa = 3.8SKK190 pKa = 11.5AKK192 pKa = 10.39IIGEE196 pKa = 4.23GLSSNPLFNSCVEE209 pKa = 3.91IFRR212 pKa = 11.84SYY214 pKa = 11.63LEE216 pKa = 4.12LSATKK221 pKa = 10.42AGNAKK226 pKa = 9.93VEE228 pKa = 4.19ANKK231 pKa = 10.64KK232 pKa = 10.03IFTTYY237 pKa = 10.09LNCMSLGEE245 pKa = 4.21SYY247 pKa = 11.03EE248 pKa = 4.3RR249 pKa = 11.84IRR251 pKa = 11.84KK252 pKa = 8.68NPLVIAKK259 pKa = 8.84FIKK262 pKa = 10.38LYY264 pKa = 11.12EE265 pKa = 4.24EE266 pKa = 4.13FTKK269 pKa = 10.52EE270 pKa = 3.86SRR272 pKa = 11.84GFKK275 pKa = 10.51DD276 pKa = 3.2DD277 pKa = 4.09FEE279 pKa = 6.81AIKK282 pKa = 10.87LLTPRR287 pKa = 11.84FKK289 pKa = 11.24VFLKK293 pKa = 10.68KK294 pKa = 10.9VFDD297 pKa = 4.31VNSSLNDD304 pKa = 4.36DD305 pKa = 3.68ILFIEE310 pKa = 4.63MPKK313 pKa = 10.56SSVVDD318 pKa = 4.03LLSEE322 pKa = 3.98PVSVGEE328 pKa = 3.99YY329 pKa = 10.28LRR331 pKa = 11.84SKK333 pKa = 10.66DD334 pKa = 3.7AISVVSTSNTLSEE347 pKa = 4.43KK348 pKa = 10.86ADD350 pKa = 3.87LLATHH355 pKa = 7.4IILRR359 pKa = 11.84FLQDD363 pKa = 3.82KK364 pKa = 10.66LPAPEE369 pKa = 6.08DD370 pKa = 3.4ILIDD374 pKa = 3.96AFLMILGRR382 pKa = 11.84TTTNSKK388 pKa = 10.61RR389 pKa = 11.84FGKK392 pKa = 9.66PVLVTLKK399 pKa = 10.27YY400 pKa = 10.76EE401 pKa = 4.15NMSKK405 pKa = 10.51EE406 pKa = 3.47IDD408 pKa = 3.13ISVVVNALNNKK419 pKa = 9.07VSGAHH424 pKa = 6.02NEE426 pKa = 3.9YY427 pKa = 10.9LGMNVLRR434 pKa = 11.84LWANSRR440 pKa = 11.84SSRR443 pKa = 11.84AMRR446 pKa = 11.84LFRR449 pKa = 11.84SLNFNPGLFSYY460 pKa = 10.92CPGILDD466 pKa = 3.34YY467 pKa = 11.03MRR469 pKa = 11.84FDD471 pKa = 4.51FYY473 pKa = 11.53KK474 pKa = 10.77AIPLKK479 pKa = 11.08DD480 pKa = 3.41MTDD483 pKa = 3.48EE484 pKa = 4.22EE485 pKa = 4.69VQSFRR490 pKa = 11.84TLRR493 pKa = 11.84LHH495 pKa = 5.23TEE497 pKa = 3.73KK498 pKa = 10.34RR499 pKa = 11.84TDD501 pKa = 3.42PQGSYY506 pKa = 10.35SAEE509 pKa = 3.79CDD511 pKa = 3.01NWILNLKK518 pKa = 9.13NRR520 pKa = 11.84SS521 pKa = 3.4

Molecular weight: 60.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

4944

35

2475

494.4

56.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.236 ± 0.32

1.82 ± 0.197

6.614 ± 0.333

5.643 ± 0.311

5.542 ± 0.348

4.632 ± 0.228

1.517 ± 0.089

7.201 ± 0.254

8.212 ± 0.287

9.79 ± 0.461

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.488 ± 0.311

6.472 ± 0.508

3.196 ± 0.249

2.447 ± 0.457

5.34 ± 0.386

9.244 ± 0.25

4.693 ± 0.37

7.019 ± 0.225

0.445 ± 0.089

4.45 ± 0.308
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski