Capybara microvirus Cap3_SP_550

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W532|A0A4P8W532_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_550 OX=2585474 PE=4 SV=1
MM1 pKa = 6.96AQKK4 pKa = 10.4IIDD7 pKa = 3.61TDD9 pKa = 3.95GVVNKK14 pKa = 9.95LPEE17 pKa = 4.49YY18 pKa = 7.6GTPGYY23 pKa = 10.15IFEE26 pKa = 4.92LAWHH30 pKa = 7.18DD31 pKa = 3.97EE32 pKa = 4.01AKK34 pKa = 10.28KK35 pKa = 10.71DD36 pKa = 3.74YY37 pKa = 11.04LVVVDD42 pKa = 5.66AKK44 pKa = 11.22PEE46 pKa = 4.09VEE48 pKa = 4.5VMNARR53 pKa = 11.84AKK55 pKa = 10.78GVTPYY60 pKa = 11.38DD61 pKa = 4.31LISTFGGIDD70 pKa = 3.38EE71 pKa = 4.38VTQAFASKK79 pKa = 9.73EE80 pKa = 3.93ASAVYY85 pKa = 10.55ADD87 pKa = 3.68VSGVPEE93 pKa = 4.13FASDD97 pKa = 3.62DD98 pKa = 4.03VYY100 pKa = 11.82DD101 pKa = 3.96SVIARR106 pKa = 11.84LKK108 pKa = 10.88ADD110 pKa = 3.15IAAYY114 pKa = 8.09EE115 pKa = 4.1ASHH118 pKa = 6.67AKK120 pKa = 9.28TDD122 pKa = 3.66EE123 pKa = 4.25SSKK126 pKa = 9.4EE127 pKa = 3.87TAEE130 pKa = 4.14EE131 pKa = 3.69VDD133 pKa = 3.45NEE135 pKa = 4.26VNKK138 pKa = 10.17EE139 pKa = 4.13VNKK142 pKa = 10.93GEE144 pKa = 4.35SKK146 pKa = 10.99

Molecular weight: 15.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W596|A0A4P8W596_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_550 OX=2585474 PE=4 SV=1
MM1 pKa = 6.97MCTRR5 pKa = 11.84PLHH8 pKa = 5.65YY9 pKa = 10.34FEE11 pKa = 6.71SNLIDD16 pKa = 3.7NEE18 pKa = 4.48TGKK21 pKa = 10.88KK22 pKa = 9.47PGFITGYY29 pKa = 7.1QVKK32 pKa = 9.99LAGFRR37 pKa = 11.84LFAKK41 pKa = 10.34HH42 pKa = 6.78GIACTEE48 pKa = 4.07TYY50 pKa = 9.73LAKK53 pKa = 10.19PVEE56 pKa = 4.75VPCGKK61 pKa = 10.37CPEE64 pKa = 4.13CRR66 pKa = 11.84KK67 pKa = 9.48ALKK70 pKa = 8.2MQWVARR76 pKa = 11.84AVAEE80 pKa = 4.46LEE82 pKa = 4.46TSKK85 pKa = 10.65HH86 pKa = 6.01AYY88 pKa = 9.85FLTLTYY94 pKa = 11.12DD95 pKa = 3.72NDD97 pKa = 4.02HH98 pKa = 6.75LPSDD102 pKa = 4.21FMCHH106 pKa = 6.35KK107 pKa = 10.29EE108 pKa = 4.06HH109 pKa = 6.77IQVFLNRR116 pKa = 11.84FRR118 pKa = 11.84KK119 pKa = 9.18NNKK122 pKa = 6.74TRR124 pKa = 11.84YY125 pKa = 9.53LIVGEE130 pKa = 4.29HH131 pKa = 6.74GEE133 pKa = 4.25LSNRR137 pKa = 11.84PHH139 pKa = 5.71YY140 pKa = 10.25HH141 pKa = 6.81AILYY145 pKa = 7.93TEE147 pKa = 4.4NPIDD151 pKa = 5.47DD152 pKa = 6.18LIPVNKK158 pKa = 10.29SKK160 pKa = 9.09TLPLYY165 pKa = 10.69EE166 pKa = 4.24SDD168 pKa = 4.53KK169 pKa = 10.49VTKK172 pKa = 9.52QWQNGIVKK180 pKa = 10.1IGVAYY185 pKa = 8.42PQAIAYY191 pKa = 8.97SVGYY195 pKa = 9.85LVSKK199 pKa = 9.74EE200 pKa = 3.84KK201 pKa = 9.73KK202 pKa = 8.26TAFKK206 pKa = 9.74MQSQGLGYY214 pKa = 10.51QFFSGLNRR222 pKa = 11.84RR223 pKa = 11.84YY224 pKa = 10.1VLSDD228 pKa = 2.83MHH230 pKa = 6.71GHH232 pKa = 5.54EE233 pKa = 5.34MIVSLPRR240 pKa = 11.84YY241 pKa = 8.93LKK243 pKa = 10.54KK244 pKa = 10.69KK245 pKa = 9.61YY246 pKa = 10.04DD247 pKa = 3.69LNFDD251 pKa = 3.86YY252 pKa = 10.95DD253 pKa = 3.99DD254 pKa = 4.38SLNSIKK260 pKa = 9.5WHH262 pKa = 6.0NEE264 pKa = 3.28VVASGLKK271 pKa = 10.15EE272 pKa = 3.49EE273 pKa = 4.57TYY275 pKa = 11.06RR276 pKa = 11.84DD277 pKa = 3.41FKK279 pKa = 11.36EE280 pKa = 3.84YY281 pKa = 11.06LEE283 pKa = 4.09EE284 pKa = 4.93SKK286 pKa = 10.8LQKK289 pKa = 10.62

Molecular weight: 33.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1342

86

577

223.7

24.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.24 ± 1.407

1.043 ± 0.314

5.514 ± 0.719

6.855 ± 1.323

4.471 ± 0.558

6.408 ± 0.906

2.012 ± 0.525

5.44 ± 0.611

7.079 ± 1.471

7.899 ± 0.789

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.937 ± 0.22

5.365 ± 0.547

3.875 ± 0.765

2.906 ± 0.424

3.055 ± 0.662

7.973 ± 1.338

5.961 ± 0.644

6.334 ± 0.913

1.267 ± 0.351

5.365 ± 0.532
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski