Pediococcus phage cIP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Coetzeevirus; Pediococcus virus cIP1

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 57 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8FV15|G8FV15_9CAUD Uncharacterized protein OS=Pediococcus phage cIP1 OX=2681621 GN=clP1_032 PE=4 SV=1
MM1 pKa = 6.09MTLYY5 pKa = 10.86NVGDD9 pKa = 3.78TVRR12 pKa = 11.84LYY14 pKa = 10.62NGTVGVVDD22 pKa = 3.84VVTSGGALLIRR33 pKa = 11.84GQYY36 pKa = 7.71VQPDD40 pKa = 3.65DD41 pKa = 3.75VFNVCRR47 pKa = 11.84KK48 pKa = 9.49LKK50 pKa = 10.4PGDD53 pKa = 3.51VVTFKK58 pKa = 10.59PVYY61 pKa = 9.36EE62 pKa = 4.32LRR64 pKa = 11.84QCPLWGQYY72 pKa = 11.08GDD74 pKa = 5.32DD75 pKa = 3.9EE76 pKa = 6.41LDD78 pKa = 3.44TVFGIRR84 pKa = 11.84TADD87 pKa = 3.27IPEE90 pKa = 4.32KK91 pKa = 10.4ATVDD95 pKa = 3.5VCHH98 pKa = 7.21CYY100 pKa = 10.04PGSDD104 pKa = 3.44DD105 pKa = 3.71VFTIEE110 pKa = 4.15DD111 pKa = 3.76SEE113 pKa = 4.84YY114 pKa = 11.09SFLSSMIEE122 pKa = 4.2RR123 pKa = 11.84IDD125 pKa = 3.28

Molecular weight: 13.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8FV22|G8FV22_9CAUD Uncharacterized protein OS=Pediococcus phage cIP1 OX=2681621 GN=clP1_039 PE=4 SV=1
MM1 pKa = 7.34SFAPGKK7 pKa = 10.9YY8 pKa = 8.78EE9 pKa = 3.8VSDD12 pKa = 3.61LGRR15 pKa = 11.84VRR17 pKa = 11.84RR18 pKa = 11.84AAWVGSGGKK27 pKa = 8.86KK28 pKa = 9.66HH29 pKa = 6.62PARR32 pKa = 11.84IVKK35 pKa = 9.4QWDD38 pKa = 3.11NGQRR42 pKa = 11.84AANVTFYY49 pKa = 11.29DD50 pKa = 3.52DD51 pKa = 3.34HH52 pKa = 6.4TKK54 pKa = 10.12VNRR57 pKa = 11.84RR58 pKa = 11.84VGMLVAEE65 pKa = 5.09AFMADD70 pKa = 4.13QPGKK74 pKa = 9.68WVLHH78 pKa = 6.42HH79 pKa = 7.71DD80 pKa = 3.54GDD82 pKa = 3.68NWNNRR87 pKa = 11.84LSNLFKK93 pKa = 10.61SDD95 pKa = 3.14NRR97 pKa = 11.84HH98 pKa = 5.07NPEE101 pKa = 2.99ARR103 pKa = 11.84ARR105 pKa = 11.84HH106 pKa = 5.54LFVGGKK112 pKa = 8.92HH113 pKa = 5.61FKK115 pKa = 9.85SAHH118 pKa = 5.52DD119 pKa = 3.36AARR122 pKa = 11.84YY123 pKa = 9.48LRR125 pKa = 11.84VSDD128 pKa = 3.44TTIRR132 pKa = 11.84TAATAGKK139 pKa = 9.67KK140 pKa = 10.12INDD143 pKa = 3.92KK144 pKa = 10.81KK145 pKa = 11.24VIWEE149 pKa = 4.05KK150 pKa = 11.28

Molecular weight: 17.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

57

0

57

11576

42

1084

203.1

22.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.166 ± 0.666

0.501 ± 0.107

7.11 ± 0.388

5.425 ± 0.418

3.732 ± 0.201

7.498 ± 0.397

1.693 ± 0.146

6.133 ± 0.284

6.453 ± 0.263

7.058 ± 0.229

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.222 ± 0.263

5.382 ± 0.215

3.119 ± 0.215

3.17 ± 0.177

4.829 ± 0.408

6.056 ± 0.389

6.323 ± 0.25

7.481 ± 0.303

1.132 ± 0.118

4.518 ± 0.368
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski