Synechococcus phage S-CBS1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 5.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 43 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8CLA7|G8CLA7_9CAUD Major tropism determinant OS=Synechococcus phage S-CBS1 OX=909297 GN=mtd PE=4 SV=1
MM1 pKa = 7.48SLPRR5 pKa = 11.84IGGFSAPGTADD16 pKa = 3.77YY17 pKa = 11.67ADD19 pKa = 4.59LDD21 pKa = 4.08YY22 pKa = 11.54DD23 pKa = 3.98GSDD26 pKa = 3.17RR27 pKa = 11.84LITITYY33 pKa = 8.17KK34 pKa = 10.56QGGASGGVVGTLNMTYY50 pKa = 10.23VGEE53 pKa = 4.32STNVDD58 pKa = 3.67TIYY61 pKa = 10.6WSS63 pKa = 3.21

Molecular weight: 6.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8CLE3|G8CLE3_9CAUD Uncharacterized protein OS=Synechococcus phage S-CBS1 OX=909297 GN=S-CBS1_gp43 PE=4 SV=1
MM1 pKa = 7.44LAIKK5 pKa = 10.54LIDD8 pKa = 4.55NIEE11 pKa = 3.75KK12 pKa = 9.28TAIKK16 pKa = 10.2RR17 pKa = 11.84VTNMQKK23 pKa = 10.45QMAFASSVALNEE35 pKa = 3.89TAFQARR41 pKa = 11.84QSLNKK46 pKa = 9.7STVQFFNAPVKK57 pKa = 9.0FTQSAFLVEE66 pKa = 4.55KK67 pKa = 10.56SKK69 pKa = 9.42KK70 pKa = 7.64TNLIATVYY78 pKa = 10.5AQDD81 pKa = 3.42AAGKK85 pKa = 10.11DD86 pKa = 3.04RR87 pKa = 11.84ARR89 pKa = 11.84YY90 pKa = 9.51LRR92 pKa = 11.84FGTAGGTRR100 pKa = 11.84PQKK103 pKa = 9.89GFEE106 pKa = 4.18RR107 pKa = 11.84FFSGAIPSDD116 pKa = 3.46GTIPPGSYY124 pKa = 10.73FMPTSTVKK132 pKa = 9.95TNRR135 pKa = 11.84HH136 pKa = 5.39GNVSQATLRR145 pKa = 11.84RR146 pKa = 11.84ITKK149 pKa = 9.87GINGDD154 pKa = 3.34PRR156 pKa = 11.84GGFFMGTPRR165 pKa = 11.84GGNRR169 pKa = 11.84PPGIYY174 pKa = 9.47RR175 pKa = 11.84RR176 pKa = 11.84SRR178 pKa = 11.84LRR180 pKa = 11.84LTPYY184 pKa = 10.68FIATQDD190 pKa = 3.56KK191 pKa = 9.68PDD193 pKa = 3.42YY194 pKa = 8.67TARR197 pKa = 11.84FPISTITQKK206 pKa = 10.22VVQRR210 pKa = 11.84SYY212 pKa = 11.49SGNFQTALAKK222 pKa = 10.63ALATARR228 pKa = 3.91

Molecular weight: 25.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

43

0

43

9374

40

836

218.0

23.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.529 ± 0.552

1.056 ± 0.173

6.198 ± 0.279

6.113 ± 0.393

2.998 ± 0.252

8.161 ± 0.425

1.675 ± 0.234

4.918 ± 0.325

3.339 ± 0.258

8.47 ± 0.403

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.24 ± 0.219

3.563 ± 0.197

5.163 ± 0.351

4.011 ± 0.235

6.337 ± 0.442

6.667 ± 0.308

7.094 ± 0.488

6.742 ± 0.278

1.856 ± 0.203

2.87 ± 0.215
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski