Camellia chlorotic dwarf-associated virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Citlodavirus

Average proteome isoelectric point is 7.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1JHH9|A0A2P1JHH9_9GEMI Replication-associated protein OS=Camellia chlorotic dwarf-associated virus OX=2122733 PE=3 SV=1
MM1 pKa = 7.84APTQKK6 pKa = 10.01QFRR9 pKa = 11.84FASKK13 pKa = 10.83NIFLTFAQCNLLMATLLDD31 pKa = 3.95HH32 pKa = 7.34LKK34 pKa = 10.65HH35 pKa = 6.2LLSNLDD41 pKa = 3.29IIYY44 pKa = 10.2ISVCSEE50 pKa = 3.34LHH52 pKa = 6.63ASGDD56 pKa = 3.78PHH58 pKa = 7.9LHH60 pKa = 7.01AMVQLKK66 pKa = 10.4KK67 pKa = 10.19PLQTRR72 pKa = 11.84NPRR75 pKa = 11.84FFDD78 pKa = 3.71YY79 pKa = 11.27NSDD82 pKa = 3.55RR83 pKa = 11.84NNFHH87 pKa = 7.37PSFEE91 pKa = 4.17PLRR94 pKa = 11.84NPRR97 pKa = 11.84ASKK100 pKa = 10.69SYY102 pKa = 9.6IQKK105 pKa = 10.14DD106 pKa = 3.67GNFIEE111 pKa = 4.83EE112 pKa = 5.47GEE114 pKa = 4.2FQSNGKK120 pKa = 9.47SPHH123 pKa = 5.92KK124 pKa = 9.5PANKK128 pKa = 8.39VWQEE132 pKa = 3.8ILQKK136 pKa = 10.07STDD139 pKa = 3.33EE140 pKa = 3.92NDD142 pKa = 3.29FYY144 pKa = 11.58KK145 pKa = 9.79QVKK148 pKa = 5.61MHH150 pKa = 6.77RR151 pKa = 11.84PADD154 pKa = 3.89FVLRR158 pKa = 11.84WPAISSFAKK167 pKa = 10.13DD168 pKa = 3.04HH169 pKa = 5.91YY170 pKa = 10.67NRR172 pKa = 11.84NFIPYY177 pKa = 8.37TPQFEE182 pKa = 4.64NFVNLPDD189 pKa = 5.76NIRR192 pKa = 11.84EE193 pKa = 4.03WANNNVLCVSKK204 pKa = 9.69TFVQYY209 pKa = 10.57DD210 pKa = 3.69LCYY213 pKa = 9.29EE214 pKa = 4.2CSKK217 pKa = 11.05KK218 pKa = 10.97AMFEE222 pKa = 4.28TEE224 pKa = 4.28CPISLLHH231 pKa = 7.05NFYY234 pKa = 10.81CDD236 pKa = 3.21NCRR239 pKa = 11.84SPSLDD244 pKa = 4.09LIVHH248 pKa = 6.22EE249 pKa = 5.38ASTSVDD255 pKa = 3.04QAEE258 pKa = 4.49QEE260 pKa = 4.26RR261 pKa = 11.84HH262 pKa = 5.87PGQDD266 pKa = 2.99PSDD269 pKa = 4.21YY270 pKa = 10.49IIISQTPP277 pKa = 2.89

Molecular weight: 32.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1JHH5|A0A2P1JHH5_9GEMI Uncharacterized protein OS=Camellia chlorotic dwarf-associated virus OX=2122733 PE=4 SV=1
MM1 pKa = 7.29ATTRR5 pKa = 11.84SGRR8 pKa = 11.84VSGTVTDD15 pKa = 4.9RR16 pKa = 11.84LPMWRR21 pKa = 11.84SRR23 pKa = 11.84RR24 pKa = 11.84KK25 pKa = 9.15RR26 pKa = 11.84SARR29 pKa = 11.84SRR31 pKa = 11.84GSATSAARR39 pKa = 11.84RR40 pKa = 11.84SRR42 pKa = 11.84SAGVSIRR49 pKa = 11.84RR50 pKa = 11.84TGWKK54 pKa = 9.97GKK56 pKa = 10.55VPDD59 pKa = 4.31GCKK62 pKa = 10.42GPCKK66 pKa = 9.24THH68 pKa = 6.71SVDD71 pKa = 4.78LIKK74 pKa = 9.83TVYY77 pKa = 10.19HH78 pKa = 7.28DD79 pKa = 3.5GRR81 pKa = 11.84GAGFIGNIDD90 pKa = 3.5KK91 pKa = 11.55GEE93 pKa = 4.22DD94 pKa = 2.9LGNRR98 pKa = 11.84DD99 pKa = 2.97GRR101 pKa = 11.84RR102 pKa = 11.84IRR104 pKa = 11.84ITKK107 pKa = 9.35VLLRR111 pKa = 11.84GKK113 pKa = 9.79VWLDD117 pKa = 3.12VTNAALPGSNVCKK130 pKa = 10.37VWVIKK135 pKa = 10.1DD136 pKa = 3.54RR137 pKa = 11.84RR138 pKa = 11.84PGNEE142 pKa = 3.14IVNFTSLMDD151 pKa = 3.74MTDD154 pKa = 4.11SEE156 pKa = 4.67PMSALIKK163 pKa = 9.58MDD165 pKa = 3.17YY166 pKa = 9.9RR167 pKa = 11.84DD168 pKa = 3.57RR169 pKa = 11.84FIVLRR174 pKa = 11.84DD175 pKa = 3.52MQFDD179 pKa = 3.48LHH181 pKa = 6.62GGKK184 pKa = 10.13DD185 pKa = 3.6FRR187 pKa = 11.84VDD189 pKa = 3.41EE190 pKa = 4.52ASMDD194 pKa = 3.41EE195 pKa = 4.43MISVNCEE202 pKa = 3.72SLFSHH207 pKa = 6.7EE208 pKa = 5.12DD209 pKa = 3.22EE210 pKa = 5.63GNLSHH215 pKa = 7.05CLEE218 pKa = 4.43NGILVYY224 pKa = 8.39FACSDD229 pKa = 3.72PRR231 pKa = 11.84NAMQITAQCRR241 pKa = 11.84VYY243 pKa = 10.97FFDD246 pKa = 3.69STVNN250 pKa = 3.3

Molecular weight: 28.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1408

108

333

234.7

26.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.185 ± 0.412

2.983 ± 0.723

5.895 ± 0.636

5.398 ± 0.828

4.972 ± 0.602

5.611 ± 1.365

2.699 ± 0.601

5.398 ± 0.218

6.392 ± 0.412

7.528 ± 0.389

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.912 ± 0.343

5.824 ± 1.011

5.611 ± 0.678

3.196 ± 0.726

6.179 ± 1.02

8.594 ± 0.848

3.693 ± 0.701

6.676 ± 0.993

1.705 ± 0.252

3.551 ± 0.396
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski