Rhinolophus gammaherpesvirus 1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; unclassified Gammaherpesvirinae

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 84 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5U691|A0A2Z5U691_9GAMA Tripartite terminase subunit 1 OS=Rhinolophus gammaherpesvirus 1 OX=2054179 GN=ORF10 PE=3 SV=1
MM1 pKa = 7.7KK2 pKa = 10.64LLLLLGLCGVVLVQLIQGQITNTPQTTNSTNPDD35 pKa = 3.39GDD37 pKa = 4.04STDD40 pKa = 3.17ATLNNSSTVSAPRR53 pKa = 11.84QVPVLYY59 pKa = 10.38YY60 pKa = 10.33LSPQWRR66 pKa = 11.84LPLLLTGIFLALLTVLCVLWFFYY89 pKa = 10.93LCLRR93 pKa = 11.84FVVCPPCDD101 pKa = 3.7GEE103 pKa = 4.92DD104 pKa = 3.55PQAEE108 pKa = 4.12EE109 pKa = 4.48EE110 pKa = 4.45EE111 pKa = 4.43EE112 pKa = 4.69GEE114 pKa = 4.16HH115 pKa = 7.05SEE117 pKa = 4.25TTLEE121 pKa = 4.21SGLGEE126 pKa = 4.1SQEE129 pKa = 4.07GSEE132 pKa = 5.5AEE134 pKa = 4.17DD135 pKa = 3.49AVV137 pKa = 3.69

Molecular weight: 14.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5UL29|A0A2Z5UL29_9GAMA Envelope glycoprotein B OS=Rhinolophus gammaherpesvirus 1 OX=2054179 GN=ORF11 PE=3 SV=1
MM1 pKa = 6.5GTCVEE6 pKa = 4.32KK7 pKa = 10.83GKK9 pKa = 10.95KK10 pKa = 9.38NIYY13 pKa = 9.25RR14 pKa = 11.84VEE16 pKa = 3.91EE17 pKa = 4.29RR18 pKa = 11.84EE19 pKa = 4.3EE20 pKa = 3.73MWHH23 pKa = 6.46PKK25 pKa = 9.88HH26 pKa = 6.98IIYY29 pKa = 8.33TPCIYY34 pKa = 10.81SKK36 pKa = 10.47ILNVVSLVKK45 pKa = 10.29RR46 pKa = 11.84VSLVKK51 pKa = 10.27RR52 pKa = 11.84VSLVKK57 pKa = 10.27RR58 pKa = 11.84VSLVKK63 pKa = 10.27RR64 pKa = 11.84VSLVKK69 pKa = 10.27RR70 pKa = 11.84VSLVKK75 pKa = 10.31RR76 pKa = 11.84VSLYY80 pKa = 11.11SLNTYY85 pKa = 10.43SVLSAMDD92 pKa = 3.53RR93 pKa = 11.84DD94 pKa = 4.45GIFVFLYY101 pKa = 10.03KK102 pKa = 10.53RR103 pKa = 11.84KK104 pKa = 10.04

Molecular weight: 12.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

84

0

84

37158

74

2843

442.4

49.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.855 ± 0.202

2.446 ± 0.175

4.836 ± 0.163

5.463 ± 0.394

4.998 ± 0.198

4.742 ± 0.18

2.777 ± 0.102

5.732 ± 0.173

5.568 ± 0.168

10.116 ± 0.286

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.468 ± 0.127

4.718 ± 0.171

5.999 ± 0.361

4.252 ± 0.213

4.182 ± 0.136

9.164 ± 0.26

6.655 ± 0.241

6.768 ± 0.171

1.009 ± 0.071

3.251 ± 0.14
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski