Aliiroseovarius pelagivivens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Aliiroseovarius

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3215 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2R8ARA5|A0A2R8ARA5_9RHOB DNA-directed RNA polymerase subunit omega OS=Aliiroseovarius pelagivivens OX=1639690 GN=rpoZ PE=3 SV=1
MM1 pKa = 7.88RR2 pKa = 11.84SLRR5 pKa = 11.84PTLLSIPIIAATALPLASHH24 pKa = 6.33PHH26 pKa = 4.8VFIDD30 pKa = 4.57AGANLLFDD38 pKa = 5.51DD39 pKa = 5.3AGQLAAVRR47 pKa = 11.84VFWAYY52 pKa = 10.98DD53 pKa = 3.32EE54 pKa = 5.34FYY56 pKa = 11.3SLLLVEE62 pKa = 5.99DD63 pKa = 4.41NGLDD67 pKa = 3.58ADD69 pKa = 4.36GDD71 pKa = 4.15GTPEE75 pKa = 3.72QAALDD80 pKa = 4.15AYY82 pKa = 10.5AGQDD86 pKa = 3.45VDD88 pKa = 3.55WAAGFPGDD96 pKa = 5.97LYY98 pKa = 11.34LQDD101 pKa = 4.28KK102 pKa = 10.55GSDD105 pKa = 3.48VALLGPVEE113 pKa = 3.97HH114 pKa = 6.64GMRR117 pKa = 11.84YY118 pKa = 9.31EE119 pKa = 4.38DD120 pKa = 3.52GRR122 pKa = 11.84VISWHH127 pKa = 5.65IRR129 pKa = 11.84PLEE132 pKa = 3.97TRR134 pKa = 11.84VSVGAEE140 pKa = 3.67PLLVQIYY147 pKa = 10.62DD148 pKa = 3.36PTFFVAYY155 pKa = 9.8DD156 pKa = 3.2VRR158 pKa = 11.84LPVTVKK164 pKa = 10.58GPEE167 pKa = 4.16GCTVEE172 pKa = 5.91HH173 pKa = 7.05IPADD177 pKa = 3.77LNAAYY182 pKa = 10.3DD183 pKa = 3.83KK184 pKa = 11.55VEE186 pKa = 4.02SLLYY190 pKa = 10.89GPDD193 pKa = 3.27SVEE196 pKa = 4.2YY197 pKa = 10.87SDD199 pKa = 5.79DD200 pKa = 3.87SYY202 pKa = 12.03PEE204 pKa = 4.06VGDD207 pKa = 4.43LFADD211 pKa = 3.78QLLLTCSEE219 pKa = 4.37

Molecular weight: 23.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2R8AN06|A0A2R8AN06_9RHOB Urease accessory protein UreG OS=Aliiroseovarius pelagivivens OX=1639690 GN=ureG PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.62GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.45AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3215

0

3215

1011528

31

3616

314.6

34.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.457 ± 0.051

0.882 ± 0.014

6.318 ± 0.04

5.988 ± 0.039

3.853 ± 0.028

8.649 ± 0.072

2.129 ± 0.022

5.408 ± 0.033

3.682 ± 0.03

9.817 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.941 ± 0.023

2.893 ± 0.023

4.858 ± 0.036

3.257 ± 0.026

6.022 ± 0.039

5.417 ± 0.035

5.507 ± 0.031

7.288 ± 0.033

1.366 ± 0.019

2.264 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski