Dictyobacter vulcani

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Dictyobacteraceae; Dictyobacter

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6350 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J4KP24|A0A5J4KP24_9CHLR Uncharacterized protein OS=Dictyobacter vulcani OX=2607529 GN=KDW_56500 PE=4 SV=1
MM1 pKa = 7.41TSSPQQSQPAATSSDD16 pKa = 3.5QPLSDD21 pKa = 4.23SLPVSAACSPDD32 pKa = 3.47AAEE35 pKa = 4.7HH36 pKa = 6.64CLTCGDD42 pKa = 3.62VAVSVRR48 pKa = 11.84VVQVNVEE55 pKa = 3.88QGTALVTVEE64 pKa = 4.37STTEE68 pKa = 4.0EE69 pKa = 3.85IDD71 pKa = 3.26ISLLDD76 pKa = 3.77SVAVGDD82 pKa = 3.97TVLVHH87 pKa = 6.53GGVALEE93 pKa = 3.96RR94 pKa = 11.84CGLSMHH100 pKa = 6.32GEE102 pKa = 4.17EE103 pKa = 5.38VDD105 pKa = 3.99VDD107 pKa = 4.01DD108 pKa = 5.46

Molecular weight: 11.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J4KFV2|A0A5J4KFV2_9CHLR Uncharacterized protein OS=Dictyobacter vulcani OX=2607529 GN=KDW_04270 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.45RR3 pKa = 11.84TWQPKK8 pKa = 8.26RR9 pKa = 11.84IPRR12 pKa = 11.84KK13 pKa = 9.21RR14 pKa = 11.84EE15 pKa = 3.41HH16 pKa = 7.15GFMKK20 pKa = 10.47RR21 pKa = 11.84MSTRR25 pKa = 11.84NGRR28 pKa = 11.84RR29 pKa = 11.84VLKK32 pKa = 10.49ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.41GRR39 pKa = 11.84WSLTVV44 pKa = 3.02

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6350

0

6350

1951268

39

8292

307.3

34.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.197 ± 0.031

0.988 ± 0.01

4.871 ± 0.02

5.811 ± 0.036

3.587 ± 0.02

6.826 ± 0.028

2.635 ± 0.019

6.045 ± 0.024

3.594 ± 0.028

10.881 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.352 ± 0.015

3.426 ± 0.024

5.055 ± 0.022

5.409 ± 0.033

5.845 ± 0.029

6.139 ± 0.029

6.063 ± 0.033

6.69 ± 0.027

1.441 ± 0.013

3.146 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski