Bisgaard taxon 44 str. 111

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Psittacicellaceae; Psittacicella

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1591 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3A1YA77|A0A3A1YA77_9PAST Uncharacterized protein OS=Bisgaard taxon 44 str. 111 OX=2028575 GN=CKF58_06900 PE=4 SV=1
MM1 pKa = 7.39SLIGIFYY8 pKa = 10.71GSDD11 pKa = 2.9TGNTEE16 pKa = 3.56NLAFMLSNKK25 pKa = 9.35FGKK28 pKa = 10.12EE29 pKa = 3.57LTDD32 pKa = 3.36VYY34 pKa = 11.38DD35 pKa = 3.77VAKK38 pKa = 9.32CTQADD43 pKa = 3.79VEE45 pKa = 4.75KK46 pKa = 11.42YY47 pKa = 10.68NILLLGIPTWYY58 pKa = 10.36YY59 pKa = 11.6GEE61 pKa = 4.91AQADD65 pKa = 3.72WEE67 pKa = 4.85DD68 pKa = 3.92FFPTLRR74 pKa = 11.84QVDD77 pKa = 4.12FNEE80 pKa = 3.78RR81 pKa = 11.84VVAIFGCGDD90 pKa = 3.19QEE92 pKa = 5.04DD93 pKa = 4.44YY94 pKa = 11.9ADD96 pKa = 4.07YY97 pKa = 10.88FCDD100 pKa = 4.42AMGEE104 pKa = 3.93IANIVEE110 pKa = 4.24QNGGVVIGYY119 pKa = 6.68TSKK122 pKa = 10.78EE123 pKa = 4.14GYY125 pKa = 8.73TFTEE129 pKa = 4.25SKK131 pKa = 11.14ALVDD135 pKa = 3.81EE136 pKa = 4.35NTLVGLCIDD145 pKa = 4.32EE146 pKa = 4.82DD147 pKa = 3.9RR148 pKa = 11.84QPEE151 pKa = 4.31LTEE154 pKa = 3.7QRR156 pKa = 11.84VDD158 pKa = 2.7AWVAQLKK165 pKa = 10.56ADD167 pKa = 4.48LGII170 pKa = 4.39

Molecular weight: 19.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3A1YCA9|A0A3A1YCA9_9PAST SSD domain-containing protein OS=Bisgaard taxon 44 str. 111 OX=2028575 GN=CKF58_07635 PE=4 SV=1
MM1 pKa = 7.29FKK3 pKa = 10.65SIALLLIRR11 pKa = 11.84LYY13 pKa = 9.37QTAISPLLGSGKK25 pKa = 9.61CRR27 pKa = 11.84YY28 pKa = 9.75HH29 pKa = 5.83PTCSQYY35 pKa = 11.47GKK37 pKa = 10.54LAIQQRR43 pKa = 11.84GIIIGSLLTFWRR55 pKa = 11.84VIRR58 pKa = 11.84CHH60 pKa = 6.16PLCIGGIDD68 pKa = 3.73PVPSRR73 pKa = 11.84VNNKK77 pKa = 8.79KK78 pKa = 10.09VKK80 pKa = 10.06KK81 pKa = 10.26

Molecular weight: 9.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1591

0

1591

636759

18

6468

400.2

44.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.735 ± 0.082

0.848 ± 0.018

5.146 ± 0.058

5.675 ± 0.07

4.32 ± 0.053

5.488 ± 0.082

1.867 ± 0.028

6.256 ± 0.074

6.083 ± 0.063

10.274 ± 0.084

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.027

6.067 ± 0.095

3.538 ± 0.046

5.397 ± 0.105

3.727 ± 0.052

6.717 ± 0.073

6.364 ± 0.097

6.814 ± 0.057

0.837 ± 0.022

4.086 ± 0.049
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski