Exophiala aquamarina CBS 119918

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Exophiala; Exophiala aquamarina

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A072Q243|A0A072Q243_9EURO DNA excision repair protein ERCC-4 OS=Exophiala aquamarina CBS 119918 OX=1182545 GN=A1O9_03532 PE=3 SV=1
MM1 pKa = 7.33VPQSLLGLLSLPLLVSAHH19 pKa = 5.39FHH21 pKa = 5.47MLYY24 pKa = 7.22PTPRR28 pKa = 11.84SDD30 pKa = 5.95DD31 pKa = 4.14DD32 pKa = 3.67DD33 pKa = 4.21TEE35 pKa = 4.28PTFPCGGFPVSDD47 pKa = 3.15NRR49 pKa = 11.84TAVSSTAFPLALEE62 pKa = 4.47MGHH65 pKa = 6.92DD66 pKa = 3.3RR67 pKa = 11.84TVIQVLLGLGNNVGDD82 pKa = 4.71GFDD85 pKa = 3.2ITLKK89 pKa = 9.18QTFQQQGEE97 pKa = 4.56GAFCLPSVQIPSGLNITDD115 pKa = 3.7GTNGTLQVVTDD126 pKa = 4.11GEE128 pKa = 4.82GGGGLYY134 pKa = 9.7ICADD138 pKa = 3.83LTFTSSPTVQMLPSSCANGTGITAFPLSSNVNANQTNGDD177 pKa = 3.85GSPQGGSGSASPSGSGSSTSSSTATGASASPTSNAAILTAGWSLLGAVVLGAVALMM233 pKa = 4.52

Molecular weight: 23.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A072NYA7|A0A072NYA7_9EURO Uncharacterized protein OS=Exophiala aquamarina CBS 119918 OX=1182545 GN=A1O9_11633 PE=4 SV=1
MM1 pKa = 7.07TGRR4 pKa = 11.84RR5 pKa = 11.84APRR8 pKa = 11.84HH9 pKa = 5.71LPSLSKK15 pKa = 10.93LPLSGTTGRR24 pKa = 11.84KK25 pKa = 7.83VLRR28 pKa = 11.84FLNLLRR34 pKa = 11.84PRR36 pKa = 11.84RR37 pKa = 11.84HH38 pKa = 5.79NNLLKK43 pKa = 10.74GGMIGKK49 pKa = 8.88SRR51 pKa = 11.84RR52 pKa = 11.84PRR54 pKa = 11.84HH55 pKa = 5.83LNLSKK60 pKa = 10.76LPNPPYY66 pKa = 10.04PNRR69 pKa = 11.84LRR71 pKa = 11.84AGTIGNSRR79 pKa = 11.84PRR81 pKa = 11.84LPSPPRR87 pKa = 11.84LPSLLLLNSLKK98 pKa = 11.05DD99 pKa = 3.5GMTGNSRR106 pKa = 11.84PRR108 pKa = 11.84LPSQFF113 pKa = 3.51

Molecular weight: 12.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13118

0

13118

6064173

37

4877

462.3

51.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.573 ± 0.017

1.206 ± 0.008

5.61 ± 0.016

5.877 ± 0.017

3.879 ± 0.014

6.89 ± 0.018

2.453 ± 0.009

5.182 ± 0.016

4.731 ± 0.015

9.185 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.138 ± 0.009

3.729 ± 0.01

5.803 ± 0.025

4.086 ± 0.015

5.92 ± 0.016

8.232 ± 0.023

6.022 ± 0.015

6.164 ± 0.015

1.504 ± 0.009

2.814 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski