Capybara microvirus Cap3_SP_539

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8T0|A0A4P8W8T0_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_539 OX=2585471 PE=4 SV=1
MM1 pKa = 7.52EE2 pKa = 6.83RR3 pKa = 11.84ITKK6 pKa = 7.76QTFIPTMGEE15 pKa = 3.85YY16 pKa = 10.38NSPKK20 pKa = 9.7FGVFVEE26 pKa = 4.41TATYY30 pKa = 10.58VPAKK34 pKa = 10.81SMIEE38 pKa = 3.99SLMLAGEE45 pKa = 4.48RR46 pKa = 11.84LRR48 pKa = 11.84CARR51 pKa = 11.84AEE53 pKa = 4.13NYY55 pKa = 10.49DD56 pKa = 3.62SDD58 pKa = 4.15EE59 pKa = 4.24VEE61 pKa = 4.21PDD63 pKa = 3.23FGFDD67 pKa = 2.86TSVRR71 pKa = 11.84DD72 pKa = 3.95FEE74 pKa = 4.45LSEE77 pKa = 3.98IGSAISHH84 pKa = 6.54GALNPQPISQQTVVPEE100 pKa = 4.3SVPSEE105 pKa = 3.98ASAEE109 pKa = 4.0AQIQSS114 pKa = 3.4

Molecular weight: 12.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8S3|A0A4P8W8S3_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_539 OX=2585471 PE=4 SV=1
MM1 pKa = 8.14DD2 pKa = 4.08CTFPLTIKK10 pKa = 10.61NPRR13 pKa = 11.84TNQFIKK19 pKa = 10.4VPCGMCIHH27 pKa = 6.43CRR29 pKa = 11.84IAKK32 pKa = 9.33VRR34 pKa = 11.84DD35 pKa = 2.95WSLRR39 pKa = 11.84LIHH42 pKa = 6.91EE43 pKa = 4.28NSLWQDD49 pKa = 2.94SCFITLTYY57 pKa = 10.87SDD59 pKa = 5.55DD60 pKa = 3.9NLPLTNCGKK69 pKa = 8.25MTLFKK74 pKa = 10.64PDD76 pKa = 3.4FQNFMKK82 pKa = 10.69RR83 pKa = 11.84LRR85 pKa = 11.84FRR87 pKa = 11.84VSSPIKK93 pKa = 10.0YY94 pKa = 8.43YY95 pKa = 11.13ACGEE99 pKa = 4.11YY100 pKa = 10.53GDD102 pKa = 4.17NGNRR106 pKa = 11.84PHH108 pKa = 5.65YY109 pKa = 9.78HH110 pKa = 6.74AIIFGMSCKK119 pKa = 10.25DD120 pKa = 3.26LRR122 pKa = 11.84DD123 pKa = 5.52FMICWDD129 pKa = 3.71KK130 pKa = 11.66GFVTVKK136 pKa = 9.9PVNAQRR142 pKa = 11.84CRR144 pKa = 11.84YY145 pKa = 7.85VCGYY149 pKa = 8.41IQKK152 pKa = 10.55KK153 pKa = 8.3IRR155 pKa = 11.84KK156 pKa = 8.29NPKK159 pKa = 8.72EE160 pKa = 3.89YY161 pKa = 10.4QSAYY165 pKa = 10.65GCLQPPFQLMSRR177 pKa = 11.84GLGLGYY183 pKa = 10.16LEE185 pKa = 4.92KK186 pKa = 10.88NRR188 pKa = 11.84EE189 pKa = 4.32EE190 pKa = 4.0YY191 pKa = 10.11WLTCRR196 pKa = 11.84NTLNGVPLSIPRR208 pKa = 11.84YY209 pKa = 7.6YY210 pKa = 10.78LKK212 pKa = 10.52KK213 pKa = 10.52DD214 pKa = 3.06WFLHH218 pKa = 5.11TKK220 pKa = 10.32VGLKK224 pKa = 10.05SDD226 pKa = 4.18SNPTTEE232 pKa = 4.01VEE234 pKa = 4.65SYY236 pKa = 11.33DD237 pKa = 4.51SAIQRR242 pKa = 11.84DD243 pKa = 3.81KK244 pKa = 11.45NVRR247 pKa = 11.84AKK249 pKa = 11.17NNLKK253 pKa = 10.08KK254 pKa = 10.58RR255 pKa = 11.84KK256 pKa = 9.13LL257 pKa = 3.52

Molecular weight: 30.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1329

74

565

265.8

30.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.396 ± 0.997

1.731 ± 0.87

5.117 ± 0.108

5.643 ± 1.034

5.041 ± 0.446

6.321 ± 0.784

1.731 ± 0.329

5.418 ± 0.42

5.719 ± 1.126

7.901 ± 0.716

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.182 ± 0.398

6.998 ± 0.678

4.439 ± 1.137

4.515 ± 0.655

4.59 ± 0.844

8.427 ± 0.997

5.493 ± 0.74

6.095 ± 0.823

1.43 ± 0.316

4.816 ± 0.378
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski