Conchiformibius steedae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Conchiformibius

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2247 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P2A3Q8|A0A3P2A3Q8_9NEIS Type I-C CRISPR-associated protein Cas7/Csd2 OS=Conchiformibius steedae OX=153493 GN=cas7c PE=4 SV=1
MM1 pKa = 7.71DD2 pKa = 4.55TNDD5 pKa = 4.0FKK7 pKa = 11.15QTLAPFFWVEE17 pKa = 3.34HH18 pKa = 6.91DD19 pKa = 5.26DD20 pKa = 3.96YY21 pKa = 11.78FSVCLYY27 pKa = 10.95AGDD30 pKa = 3.54VDD32 pKa = 5.17AYY34 pKa = 10.8QAVFDD39 pKa = 4.15SRR41 pKa = 11.84ADD43 pKa = 3.45EE44 pKa = 4.36GFEE47 pKa = 3.9GSGYY51 pKa = 10.78DD52 pKa = 3.41WTSLAVVFVAEE63 pKa = 4.18QLPEE67 pKa = 3.73LAEE70 pKa = 4.42IIEE73 pKa = 4.5FDD75 pKa = 3.7PEE77 pKa = 4.46AGMFCAYY84 pKa = 10.5CSDD87 pKa = 3.6EE88 pKa = 4.16QALKK92 pKa = 10.19TFVLAFKK99 pKa = 10.2EE100 pKa = 3.95ALEE103 pKa = 4.12NKK105 pKa = 9.78EE106 pKa = 4.55LILDD110 pKa = 3.94IFSRR114 pKa = 11.84AEE116 pKa = 3.48LDD118 pKa = 3.24

Molecular weight: 13.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P2A361|A0A3P2A361_9NEIS Glycosyltransferase family 25 protein OS=Conchiformibius steedae OX=153493 GN=EII21_07580 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.14QPSVTKK11 pKa = 10.56RR12 pKa = 11.84KK13 pKa = 7.91RR14 pKa = 11.84THH16 pKa = 5.89GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2247

0

2247

689593

22

10523

306.9

33.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.312 ± 0.105

1.052 ± 0.027

5.332 ± 0.045

5.673 ± 0.058

3.842 ± 0.046

7.143 ± 0.056

2.576 ± 0.031

5.183 ± 0.052

4.726 ± 0.05

10.247 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.343 ± 0.037

4.042 ± 0.048

4.372 ± 0.042

4.939 ± 0.053

5.682 ± 0.051

5.409 ± 0.049

4.996 ± 0.042

6.794 ± 0.048

1.375 ± 0.026

2.961 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski