Erwinia tracheiphila

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3807 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M2KIT1|A0A0M2KIT1_9GAMM DNA-binding transcriptional regulator CpxR OS=Erwinia tracheiphila OX=65700 GN=cpxR PE=4 SV=1
MM1 pKa = 7.75SYY3 pKa = 10.59QEE5 pKa = 4.66TILTQYY11 pKa = 10.25SASEE15 pKa = 4.43KK16 pKa = 9.87ILSIIDD22 pKa = 3.62TFNQALSLDD31 pKa = 4.0DD32 pKa = 4.02FTDD35 pKa = 3.64EE36 pKa = 4.82FIKK39 pKa = 10.74DD40 pKa = 3.25VWEE43 pKa = 4.15VTTCGTFGLDD53 pKa = 3.06VWGKK57 pKa = 8.36IVNVSRR63 pKa = 11.84YY64 pKa = 8.01IQADD68 pKa = 2.97IDD70 pKa = 3.73SDD72 pKa = 3.82RR73 pKa = 11.84FGFSEE78 pKa = 4.65ADD80 pKa = 3.44SGDD83 pKa = 4.43DD84 pKa = 3.6YY85 pKa = 11.45PSPFNDD91 pKa = 2.95QPFYY95 pKa = 11.46GGIQEE100 pKa = 4.32TEE102 pKa = 4.25TVKK105 pKa = 11.04LSDD108 pKa = 3.38DD109 pKa = 3.78AYY111 pKa = 10.16RR112 pKa = 11.84TLVLCKK118 pKa = 9.96AFSNISIATISEE130 pKa = 3.81INRR133 pKa = 11.84FLTILFNGRR142 pKa = 11.84GRR144 pKa = 11.84AYY146 pKa = 10.52CVDD149 pKa = 3.84YY150 pKa = 11.35GDD152 pKa = 3.35MRR154 pKa = 11.84MGIFCEE160 pKa = 4.61FEE162 pKa = 3.76LAPYY166 pKa = 9.27EE167 pKa = 4.1ISILKK172 pKa = 10.44NYY174 pKa = 9.84DD175 pKa = 3.3VLPIPSGVLVTAHH188 pKa = 6.42QIAPPYY194 pKa = 10.33FGFSDD199 pKa = 4.08DD200 pKa = 4.69SYY202 pKa = 10.81PFNDD206 pKa = 3.3GTFFRR211 pKa = 11.84DD212 pKa = 2.93II213 pKa = 3.99

Molecular weight: 24.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M2KH31|A0A0M2KH31_9GAMM Translocation and assembly module TamB OS=Erwinia tracheiphila OX=65700 GN=SY86_13740 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.42NGRR28 pKa = 11.84QVIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.14GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSKK46 pKa = 10.99

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3807

0

3807

1026315

34

3049

269.6

29.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.2 ± 0.05

1.159 ± 0.016

5.247 ± 0.035

5.644 ± 0.044

3.765 ± 0.028

7.169 ± 0.05

2.329 ± 0.024

5.784 ± 0.035

4.663 ± 0.046

10.568 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.745 ± 0.019

3.964 ± 0.035

4.302 ± 0.029

4.556 ± 0.035

6.065 ± 0.04

6.318 ± 0.038

5.363 ± 0.028

6.843 ± 0.031

1.494 ± 0.018

2.821 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski