Trichinella sp. T8

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella; unclassified Trichinella

Average proteome isoelectric point is 7.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18039 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V1LXF6|A0A0V1LXF6_9BILA Uncharacterized protein OS=Trichinella sp. T8 OX=92180 GN=T08_16602 PE=4 SV=1
MM1 pKa = 7.59LLCVYY6 pKa = 10.54YY7 pKa = 10.54SFKK10 pKa = 10.95LSGISSPEE18 pKa = 3.77DD19 pKa = 3.08VTTEE23 pKa = 3.57KK24 pKa = 11.15DD25 pKa = 3.52EE26 pKa = 5.68NIVCLNEE33 pKa = 4.37LVTLHH38 pKa = 6.05TAVSEE43 pKa = 4.19RR44 pKa = 11.84RR45 pKa = 11.84LITDD49 pKa = 5.16DD50 pKa = 4.06IINVQDD56 pKa = 3.45YY57 pKa = 10.98AAIDD61 pKa = 3.9DD62 pKa = 4.04EE63 pKa = 5.66ANVHH67 pKa = 6.05EE68 pKa = 4.85CTEE71 pKa = 4.2GTADD75 pKa = 4.13EE76 pKa = 4.39IVEE79 pKa = 4.23EE80 pKa = 4.36LLSS83 pKa = 3.77

Molecular weight: 9.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V1LYV8|A0A0V1LYV8_9BILA Uncharacterized protein (Fragment) OS=Trichinella sp. T8 OX=92180 GN=T08_6325 PE=4 SV=1
MM1 pKa = 7.32ARR3 pKa = 11.84SARR6 pKa = 11.84SSSRR10 pKa = 11.84SRR12 pKa = 11.84SRR14 pKa = 11.84SSTRR18 pKa = 11.84RR19 pKa = 11.84SMSSRR24 pKa = 11.84RR25 pKa = 11.84GSLTRR30 pKa = 11.84PRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84PISRR38 pKa = 11.84IQTPKK43 pKa = 10.33RR44 pKa = 11.84STRR47 pKa = 11.84QILL50 pKa = 3.35

Molecular weight: 5.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14641

3398

18039

8199004

30

7525

454.5

51.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.442 ± 0.016

2.621 ± 0.018

5.212 ± 0.013

6.304 ± 0.023

4.576 ± 0.014

4.978 ± 0.017

2.478 ± 0.008

5.551 ± 0.015

5.998 ± 0.018

9.693 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.418 ± 0.007

4.989 ± 0.013

4.345 ± 0.016

4.287 ± 0.016

5.691 ± 0.015

8.366 ± 0.019

5.312 ± 0.013

6.416 ± 0.013

1.221 ± 0.007

3.097 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski