Tomato yellow leaf curl virus-[Minab:Iran]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Tomato yellow leaf curl virus

Average proteome isoelectric point is 7.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7BM38|E7BM38_9GEMI C4 protein OS=Tomato yellow leaf curl virus-[Minab:Iran] OX=761708 GN=C4 PE=3 SV=1
MM1 pKa = 7.58GSHH4 pKa = 7.39ISMCLSNSRR13 pKa = 11.84GNSSAKK19 pKa = 9.97IRR21 pKa = 11.84DD22 pKa = 3.22SSTWYY27 pKa = 8.96PQAGQHH33 pKa = 6.34ISIQTFRR40 pKa = 11.84EE41 pKa = 4.23LNPVPTSSLTSTRR54 pKa = 11.84RR55 pKa = 11.84EE56 pKa = 4.03TPSTGEE62 pKa = 3.96SFRR65 pKa = 11.84SMEE68 pKa = 4.08GLQEE72 pKa = 4.25GDD74 pKa = 3.83NNLQTTLTPQQLTLEE89 pKa = 4.23VRR91 pKa = 11.84QRR93 pKa = 11.84FLEE96 pKa = 4.35FF97 pKa = 3.96

Molecular weight: 10.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7BM35|E7BM35_9GEMI Replication enhancer OS=Tomato yellow leaf curl virus-[Minab:Iran] OX=761708 GN=C3 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.44RR4 pKa = 11.84PGDD7 pKa = 3.95IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.07SPYY27 pKa = 10.06SSRR30 pKa = 11.84AAAPIVQGINKK41 pKa = 8.61RR42 pKa = 11.84RR43 pKa = 11.84SWTYY47 pKa = 9.3RR48 pKa = 11.84PMYY51 pKa = 9.36RR52 pKa = 11.84KK53 pKa = 9.08PRR55 pKa = 11.84IYY57 pKa = 10.75RR58 pKa = 11.84MYY60 pKa = 10.32RR61 pKa = 11.84SPDD64 pKa = 3.21VPRR67 pKa = 11.84GCEE70 pKa = 4.34GPCKK74 pKa = 9.32VQSYY78 pKa = 7.04EE79 pKa = 3.67QRR81 pKa = 11.84DD82 pKa = 4.2DD83 pKa = 3.51IKK85 pKa = 9.71HH86 pKa = 5.35TGIVRR91 pKa = 11.84CVSDD95 pKa = 3.31VTRR98 pKa = 11.84GSGITHH104 pKa = 6.35RR105 pKa = 11.84VGKK108 pKa = 9.5RR109 pKa = 11.84FCVKK113 pKa = 10.37SIYY116 pKa = 10.32FLGKK120 pKa = 9.15VWMDD124 pKa = 3.41EE125 pKa = 4.15NIKK128 pKa = 10.04KK129 pKa = 9.97QNHH132 pKa = 4.95TNQVMFFLVRR142 pKa = 11.84DD143 pKa = 3.63RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 10.91GNSPMDD153 pKa = 3.85FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.11PSTATVKK171 pKa = 10.85NDD173 pKa = 2.82LRR175 pKa = 11.84DD176 pKa = 3.36RR177 pKa = 11.84FQVMRR182 pKa = 11.84KK183 pKa = 7.65FHH185 pKa = 6.03ATVIGGPSGMKK196 pKa = 9.5EE197 pKa = 3.54QALVKK202 pKa = 10.34RR203 pKa = 11.84FFKK206 pKa = 10.71INSHH210 pKa = 4.14VTYY213 pKa = 10.54NHH215 pKa = 5.79QEE217 pKa = 3.49AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 10.08ATMKK247 pKa = 9.61IRR249 pKa = 11.84IYY251 pKa = 10.55FYY253 pKa = 11.2DD254 pKa = 4.06SISNN258 pKa = 3.66

Molecular weight: 30.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1094

97

354

182.3

21.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.845 ± 0.816

2.102 ± 0.397

4.845 ± 0.345

4.936 ± 0.662

4.662 ± 0.381

4.753 ± 0.318

4.296 ± 0.708

6.307 ± 0.75

5.576 ± 0.649

6.856 ± 1.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.468 ± 0.55

6.033 ± 0.546

6.124 ± 0.686

5.393 ± 0.591

7.038 ± 1.078

8.227 ± 1.045

5.027 ± 0.696

5.119 ± 0.898

1.371 ± 0.246

4.022 ± 0.474
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski