Cuneatibacter caecimuris

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Cuneatibacter

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3170 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7PPV9|A0A4Q7PPV9_9FIRM Uncharacterized protein OS=Cuneatibacter caecimuris OX=1796618 GN=EV209_1097 PE=4 SV=1
MM1 pKa = 7.81RR2 pKa = 11.84KK3 pKa = 8.98ILKK6 pKa = 9.77KK7 pKa = 10.41CAALGLGAVMLLSVAGCGLGQDD29 pKa = 4.6DD30 pKa = 4.94SVLPTFNVSADD41 pKa = 3.64QLSDD45 pKa = 4.47LDD47 pKa = 5.53LKK49 pKa = 11.1DD50 pKa = 5.57LYY52 pKa = 11.04DD53 pKa = 3.75EE54 pKa = 4.15QLGYY58 pKa = 10.31SYY60 pKa = 11.15KK61 pKa = 10.65GVSYY65 pKa = 10.95DD66 pKa = 3.89LDD68 pKa = 3.99VEE70 pKa = 4.74GVGAALGVDD79 pKa = 3.4MGDD82 pKa = 3.32SRR84 pKa = 11.84KK85 pKa = 10.43LGGTEE90 pKa = 3.77YY91 pKa = 10.21TCYY94 pKa = 10.42YY95 pKa = 8.1PQEE98 pKa = 4.17AATTVNGQVPVTMEE112 pKa = 3.8FVFGGDD118 pKa = 2.94KK119 pKa = 10.53KK120 pKa = 10.78FRR122 pKa = 11.84SATYY126 pKa = 10.73QFMANGNGMNAEE138 pKa = 4.11SLDD141 pKa = 3.66ALFDD145 pKa = 3.52QTLDD149 pKa = 3.65QLHH152 pKa = 6.25EE153 pKa = 4.41LYY155 pKa = 10.88GKK157 pKa = 7.97EE158 pKa = 4.04TEE160 pKa = 4.38LRR162 pKa = 11.84EE163 pKa = 4.21SSDD166 pKa = 3.34EE167 pKa = 4.27SGSNTLDD174 pKa = 3.06SVTYY178 pKa = 10.14NWKK181 pKa = 9.84QDD183 pKa = 3.54MNDD186 pKa = 3.61GYY188 pKa = 9.39ITSLQLVKK196 pKa = 10.73GDD198 pKa = 3.75YY199 pKa = 11.07GYY201 pKa = 9.15GTDD204 pKa = 3.74IVILGVIRR212 pKa = 11.84YY213 pKa = 6.75TYY215 pKa = 10.36EE216 pKa = 5.09DD217 pKa = 3.57EE218 pKa = 6.29AEE220 pKa = 4.19AQSAEE225 pKa = 4.29STEE228 pKa = 4.27EE229 pKa = 3.76

Molecular weight: 24.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q7P369|A0A4Q7P369_9FIRM Replicative DNA helicase OS=Cuneatibacter caecimuris OX=1796618 GN=EV209_2208 PE=3 SV=1
MM1 pKa = 7.67KK2 pKa = 8.72MTFQPKK8 pKa = 8.86KK9 pKa = 8.2RR10 pKa = 11.84SRR12 pKa = 11.84AKK14 pKa = 9.27VHH16 pKa = 5.81GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTANGRR28 pKa = 11.84KK29 pKa = 8.89VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.71GRR39 pKa = 11.84KK40 pKa = 8.73VLSAA44 pKa = 4.05

Molecular weight: 4.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3170

0

3170

1036976

30

2908

327.1

36.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.163 ± 0.047

1.551 ± 0.019

5.298 ± 0.033

7.835 ± 0.052

3.997 ± 0.031

7.697 ± 0.046

1.686 ± 0.018

6.354 ± 0.041

5.842 ± 0.041

9.499 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.025 ± 0.024

3.825 ± 0.033

3.595 ± 0.023

3.592 ± 0.025

5.251 ± 0.047

5.874 ± 0.038

5.08 ± 0.039

6.797 ± 0.037

1.1 ± 0.016

3.94 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski