Caudovirales sp. ctOwN3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 68 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W239|A0A5Q2W239_9CAUD Uncharacterized protein OS=Caudovirales sp. ctOwN3 OX=2656725 PE=4 SV=1
MM1 pKa = 7.56SYY3 pKa = 11.36VDD5 pKa = 4.18VFTGSTIYY13 pKa = 10.23PSEE16 pKa = 4.13VSLTKK21 pKa = 10.37LDD23 pKa = 3.77LVANVILYY31 pKa = 8.5WPLEE35 pKa = 4.1AANGVPVASDD45 pKa = 2.72IVEE48 pKa = 4.03ITTATSASWTITLPDD63 pKa = 3.69ATNGSLGEE71 pKa = 4.22TILFNNLSAYY81 pKa = 10.49SITVKK86 pKa = 10.4NASGTTILSVTSGTQWQVYY105 pKa = 7.05LHH107 pKa = 6.74NNTTVAGGWRR117 pKa = 11.84VYY119 pKa = 10.57QFGAATSTANAASLVGPGLQASGSTLEE146 pKa = 4.25TTIVTTNATVDD157 pKa = 3.74TTFVTADD164 pKa = 3.53RR165 pKa = 11.84AKK167 pKa = 10.44LYY169 pKa = 10.13NWEE172 pKa = 4.14GALGTFTLPNPAVVGNDD189 pKa = 2.7WYY191 pKa = 11.69VLVRR195 pKa = 11.84NSGTGEE201 pKa = 3.96LTIDD205 pKa = 4.14PPLTAQINGSSTLQMAIGDD224 pKa = 4.26SATIITDD231 pKa = 3.32GTNFFTIGLGQSATFAFDD249 pKa = 3.51YY250 pKa = 10.82VVVDD254 pKa = 3.39ISGSTDD260 pKa = 3.2YY261 pKa = 10.54TLSGSEE267 pKa = 4.37LNRR270 pKa = 11.84IAYY273 pKa = 8.59QFIGAVGADD282 pKa = 3.05ISVIVPNTTQQYY294 pKa = 7.55WVYY297 pKa = 11.12DD298 pKa = 3.54NTTGGFTVSIGTATQVSPLTMVNGTRR324 pKa = 11.84TIVYY328 pKa = 10.0SDD330 pKa = 3.36GTNVVPAVTSFVTGAIDD347 pKa = 4.0GGTFF351 pKa = 3.02

Molecular weight: 36.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W7G7|A0A5Q2W7G7_9CAUD Uncharacterized protein OS=Caudovirales sp. ctOwN3 OX=2656725 PE=4 SV=1
MM1 pKa = 7.2RR2 pKa = 11.84QKK4 pKa = 10.85GSKK7 pKa = 9.38KK8 pKa = 9.99RR9 pKa = 11.84LPIYY13 pKa = 10.46VKK15 pKa = 9.76DD16 pKa = 3.77YY17 pKa = 9.66YY18 pKa = 10.46IVVVVSRR25 pKa = 11.84LMLISADD32 pKa = 3.58MLILFLYY39 pKa = 8.15MGCNRR44 pKa = 11.84QSLTRR49 pKa = 11.84ARR51 pKa = 11.84IVLARR56 pKa = 11.84GFFRR60 pKa = 11.84ISTAMLILFTRR71 pKa = 11.84MSLLLYY77 pKa = 10.3NAFAFWLYY85 pKa = 10.33GAKK88 pKa = 9.5SWQKK92 pKa = 10.72INN94 pKa = 3.45

Molecular weight: 11.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

68

0

68

17551

33

1438

258.1

28.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.15 ± 0.478

0.775 ± 0.132

5.498 ± 0.258

5.92 ± 0.422

3.555 ± 0.209

8.341 ± 0.428

1.738 ± 0.198

5.293 ± 0.197

5.852 ± 0.398

7.789 ± 0.256

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.61 ± 0.161

4.484 ± 0.221

4.581 ± 0.199

4.49 ± 0.351

4.797 ± 0.266

6.37 ± 0.303

6.945 ± 0.57

6.495 ± 0.288

1.39 ± 0.147

3.926 ± 0.194
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski